Wall clock time and date at job start Mon Mar 30 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48497 * 109.47294 * 240.00298 * 3 2 1 5 5 H 1.48503 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47486 * 119.99972 * 3 2 1 7 7 C 1.39970 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99975 * 162.56251 * 7 2 1 9 9 C 1.41156 * 120.00055 * 342.55454 * 7 2 1 10 10 C 1.41534 * 119.87914 * 154.49752 * 9 7 2 11 11 C 1.35297 * 120.76200 * 179.74565 * 10 9 7 12 12 C 1.41101 * 120.21322 * 359.97438 * 11 10 9 13 13 C 1.40193 * 120.91234 * 180.02562 * 12 11 10 14 14 C 1.36390 * 119.78707 * 179.97438 * 13 12 11 15 15 C 1.39285 * 121.03798 * 0.02562 * 14 13 12 16 16 C 1.36160 * 120.91292 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.18498 * 180.02562 * 16 15 14 18 18 Cl 1.80302 * 109.47198 * 270.00207 * 17 16 15 19 19 C 1.40856 * 119.63458 * 0.04367 * 16 15 14 20 20 C 1.39944 * 121.02121 * 179.97438 * 19 16 15 21 21 H 0.97001 * 119.99926 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.61727 * 359.71739 * 10 9 7 23 23 H 1.08003 * 119.88907 * 179.97438 * 11 10 9 24 24 H 1.08002 * 120.10758 * 359.96540 * 13 12 11 25 25 H 1.08001 * 119.47939 * 180.02562 * 14 13 12 26 26 H 1.07996 * 119.54757 * 179.97438 * 15 14 13 27 27 H 1.09000 * 109.47237 * 29.99449 * 17 16 15 28 28 H 1.08997 * 109.47704 * 150.00089 * 17 16 15 29 29 H 1.08007 * 120.33286 * 359.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0958 1.6965 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0081 -1.2121 -0.0005 8 1 3.0508 -1.2335 -0.2808 9 6 1.3510 -2.4067 0.3654 10 6 1.8229 -3.6488 -0.1222 11 6 1.2099 -4.8050 0.2212 12 6 0.0867 -4.7868 1.0750 13 6 -0.5594 -5.9760 1.4407 14 6 -1.6430 -5.9317 2.2678 15 6 -2.1230 -4.7197 2.7584 16 6 -1.5227 -3.5436 2.4260 17 6 -2.0554 -2.2418 2.9667 18 17 -3.2920 -1.5812 1.8331 19 6 -0.4013 -3.5505 1.5737 20 6 0.2376 -2.3588 1.2129 21 1 -0.4850 0.8401 0.0004 22 1 2.6819 -3.6738 -0.7763 23 1 1.5816 -5.7449 -0.1594 24 1 -0.2003 -6.9242 1.0686 25 1 -2.1366 -6.8509 2.5467 26 1 -2.9831 -4.7126 3.4114 27 1 -2.5112 -2.4128 3.9420 28 1 -1.2374 -1.5285 3.0679 29 1 -0.1236 -1.4117 1.5857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238520619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:05 Heat of formation + Delta-G solvation = -0.742113 kcal Electronic energy + Delta-G solvation = -15003.096442 eV Core-core repulsion = 12494.134617 eV Total energy + Delta-G solvation = -2508.961824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72066 -37.52777 -36.69926 -35.23285 -33.76866 -31.30944 -30.31180 -27.87504 -26.64963 -23.65542 -23.07945 -21.28056 -19.43404 -17.78073 -17.47498 -16.55005 -16.41161 -15.29086 -15.20516 -14.94500 -14.50036 -14.19962 -13.82926 -13.75519 -13.59228 -13.13506 -12.82002 -12.57081 -12.52089 -12.11569 -11.70330 -11.63972 -11.33908 -11.10408 -11.05545 -10.85447 -10.26476 -9.19186 -8.61663 -8.45304 -6.26518 -0.04223 0.63084 1.31645 1.38771 1.43895 1.50392 1.91872 2.19831 2.38428 3.07385 3.81450 3.87717 4.00437 4.28376 4.38188 4.48951 4.54611 4.60618 4.76367 4.99228 5.06456 5.21427 5.28258 5.35209 5.61036 5.75134 5.77356 5.86935 6.02809 6.13004 6.31410 6.45219 6.70819 6.91879 7.01193 8.32099 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021180 B = 0.009554 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.689655 B = 2930.094835 C = 4066.846629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.036 3.964 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.486 4.486 8 H 0.079 0.921 9 C 0.072 3.928 10 C -0.181 4.181 11 C -0.100 4.100 12 C -0.161 4.161 13 C -0.075 4.075 14 C -0.185 4.185 15 C -0.086 4.086 16 C -0.148 4.148 17 C 0.030 3.970 18 Cl -0.200 7.200 19 C -0.013 4.013 20 C -0.228 4.228 21 H 0.287 0.713 22 H 0.109 0.891 23 H 0.133 0.867 24 H 0.137 0.863 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 -4.497 4.876 7.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.514 4.514 8 H 0.097 0.903 9 C 0.070 3.930 10 C -0.200 4.200 11 C -0.117 4.117 12 C -0.161 4.161 13 C -0.093 4.093 14 C -0.204 4.204 15 C -0.104 4.104 16 C -0.149 4.149 17 C -0.032 4.032 18 Cl -0.174 7.174 19 C -0.013 4.013 20 C -0.248 4.248 21 H 0.098 0.902 22 H 0.127 0.873 23 H 0.151 0.849 24 H 0.155 0.845 25 H 0.160 0.840 26 H 0.155 0.845 27 H 0.140 0.860 28 H 0.099 0.901 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.809 -4.277 4.765 6.992 hybrid contribution 0.388 0.995 -0.392 1.138 sum -2.422 -3.282 4.373 5.980 Atomic orbital electron populations 1.69904 1.08681 1.30524 1.33238 1.26702 0.95479 1.04191 0.91757 0.85340 0.78857 0.76076 0.80028 1.18420 1.19471 1.18512 1.19839 0.98177 0.92385 1.41029 0.90330 1.17986 0.92547 0.92851 0.89626 1.21213 1.02394 0.93267 1.03121 1.20919 0.95342 0.97903 0.97582 1.18131 0.99907 0.93451 1.04644 1.21179 0.95183 0.96659 0.96253 1.20799 0.99286 0.98062 1.02208 1.20829 0.98763 0.91756 0.99041 1.19604 0.97779 0.94719 1.02805 1.23031 0.92503 0.94461 0.93211 1.98699 1.61086 1.88240 1.69386 1.18108 0.94355 0.93519 0.95312 1.21238 1.02314 0.95995 1.05243 0.90193 0.87318 0.84889 0.84504 0.83999 0.84529 0.86046 0.90062 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.33 10.99 21.83 0.24 -41.09 15 2 C 0.04 1.78 5.12 85.26 0.44 2.22 15 3 Si 0.98 37.64 29.59 68.60 2.03 39.67 15 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 15 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 15 7 C -0.49 -25.50 9.02 23.41 0.21 -25.29 15 8 H 0.08 3.93 7.90 -2.91 -0.02 3.91 15 9 C 0.07 3.84 5.56 -21.32 -0.12 3.72 15 10 C -0.18 -8.54 9.66 22.40 0.22 -8.32 15 11 C -0.10 -4.19 9.71 22.29 0.22 -3.97 15 12 C -0.16 -6.93 5.75 -21.18 -0.12 -7.05 15 13 C -0.07 -2.60 9.74 22.31 0.22 -2.39 15 14 C -0.19 -5.83 9.95 22.09 0.22 -5.61 15 15 C -0.09 -2.85 9.59 22.04 0.21 -2.64 15 16 C -0.15 -5.88 5.28 -19.71 -0.10 -5.98 15 17 C 0.03 1.06 6.30 71.23 0.45 1.51 15 18 Cl -0.20 -7.65 29.13 -2.72 -0.08 -7.73 15 19 C -0.01 -0.59 5.74 -21.30 -0.12 -0.71 15 20 C -0.23 -11.85 7.95 23.11 0.18 -11.67 15 21 H 0.29 13.72 8.30 -92.71 -0.77 12.95 15 22 H 0.11 4.69 8.06 -2.91 -0.02 4.66 15 23 H 0.13 4.52 8.06 -2.91 -0.02 4.50 15 24 H 0.14 3.83 8.06 -2.91 -0.02 3.81 15 25 H 0.14 3.38 8.06 -2.91 -0.02 3.36 15 26 H 0.14 3.60 8.06 -2.91 -0.02 3.58 15 27 H 0.12 3.33 8.08 -2.39 -0.02 3.31 15 28 H 0.08 3.16 6.42 -2.39 -0.02 3.15 15 29 H 0.11 6.02 4.48 -2.91 -0.01 6.00 15 Total: -1.00 -58.79 265.89 5.25 -53.54 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.16 Total: 21.80 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 1.90 Total: -66.19 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.24 Total: -41.09 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 17 Polarization: -7.65 SS G_CDS: -0.08 Total: -7.73 kcal Total: -58.79 5.25 -53.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.796 kcal (2) G-P(sol) polarization free energy of solvation -58.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds