Wall clock time and date at job start Mon Mar 30 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47160 * 59.99676 * 3 2 1 6 6 H 1.48500 * 109.46910 * 300.00087 * 3 2 1 7 7 C 1.40153 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00285 * 169.13133 * 7 2 1 9 9 C 1.40450 * 119.99731 * 349.13080 * 7 2 1 10 10 C 1.40521 * 120.72125 * 310.03692 * 9 7 2 11 11 C 1.38154 * 120.42870 * 179.97438 * 10 9 7 12 12 C 1.37671 * 121.79468 * 0.02562 * 11 10 9 13 13 C 1.40643 * 120.79376 * 0.02562 * 12 11 10 14 14 C 1.40509 * 121.16508 * 179.97438 * 13 12 11 15 15 C 1.36336 * 119.76879 * 180.02562 * 14 13 12 16 16 C 1.39081 * 120.93196 * 0.02562 * 15 14 13 17 17 C 1.37678 * 120.71689 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.22308 * 180.02562 * 17 16 15 19 19 Cl 1.80308 * 109.47163 * 264.19162 * 18 17 16 20 20 C 1.39538 * 119.55764 * 359.71193 * 17 16 15 21 21 H 0.96996 * 120.00025 * 182.98723 * 1 2 3 22 22 H 1.08003 * 119.78533 * 359.97438 * 10 9 7 23 23 H 1.08003 * 119.10063 * 180.02562 * 11 10 9 24 24 H 1.07995 * 119.60199 * 180.02562 * 12 11 10 25 25 H 1.08002 * 120.11800 * 0.03026 * 14 13 12 26 26 H 1.08002 * 119.53296 * 179.97438 * 15 14 13 27 27 H 1.08004 * 119.63836 * 179.97438 * 16 15 14 28 28 H 1.08996 * 109.47044 * 24.18730 * 18 17 16 29 29 H 1.08997 * 109.47485 * 144.19371 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 1.2124 6 1 1.8826 2.3964 -1.2125 7 6 2.0082 -1.2137 0.0005 8 1 3.0736 -1.2222 -0.1758 9 6 1.3248 -2.4190 0.2304 10 6 0.4596 -2.5554 1.3293 11 6 -0.2100 -3.7436 1.5494 12 6 -0.0588 -4.8271 0.7136 13 6 0.7920 -4.7608 -0.4044 14 6 0.9526 -5.8619 -1.2622 15 6 1.7851 -5.7665 -2.3376 16 6 2.4817 -4.5917 -2.6004 17 6 2.3462 -3.4950 -1.7791 18 6 3.1058 -2.2275 -2.0746 19 17 4.6264 -2.1985 -1.1060 20 6 1.4956 -3.5628 -0.6750 21 1 -0.4850 -0.8389 0.0438 22 1 0.3172 -1.7259 2.0062 23 1 -0.8701 -3.8247 2.4004 24 1 -0.5999 -5.7388 0.9189 25 1 0.4183 -6.7807 -1.0705 26 1 1.9060 -6.6153 -2.9943 27 1 3.1361 -4.5392 -3.4580 28 1 3.3505 -2.1897 -3.1361 29 1 2.4915 -1.3662 -1.8123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238520713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:08 Heat of formation + Delta-G solvation = 18.980956 kcal Electronic energy + Delta-G solvation = -15358.594192 eV Core-core repulsion = 12850.487624 eV Total energy + Delta-G solvation = -2508.106568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.22653 -35.68142 -35.52370 -33.97192 -31.94452 -29.28071 -28.67148 -26.58572 -24.62753 -21.87041 -21.74803 -20.03771 -17.95016 -16.49399 -15.44622 -15.15295 -14.47727 -14.06860 -13.82555 -13.62988 -13.05558 -12.60188 -12.39060 -12.12750 -11.72849 -11.54301 -11.29007 -10.97909 -10.59966 -10.49078 -10.14956 -9.87331 -9.85046 -9.63535 -9.23224 -9.02006 -8.50113 -7.66925 -7.28679 -6.77417 -4.54515 1.44095 2.10998 2.76463 3.10025 3.12536 3.30022 3.39381 3.91214 4.06072 4.64669 5.25361 5.34648 5.46749 5.65248 5.79670 5.95197 6.11942 6.21161 6.31733 6.36590 6.62265 6.66183 6.92643 7.08879 7.18583 7.21748 7.38136 7.56128 7.65922 7.77880 7.81678 8.00465 8.11495 8.49853 8.68159 10.01556 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.011693 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.991190 B = 2393.926342 C = 3360.578100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.029 3.971 3 Si 1.066 2.934 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.118 0.882 9 C 0.119 3.881 10 C -0.248 4.248 11 C -0.050 4.050 12 C -0.258 4.258 13 C -0.001 4.001 14 C -0.147 4.147 15 C -0.111 4.111 16 C -0.169 4.169 17 C -0.048 4.048 18 C -0.005 4.005 19 Cl -0.186 7.186 20 C -0.089 4.089 21 H 0.299 0.701 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -2.618 -3.240 5.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.192 4.192 3 Si 0.890 3.110 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.135 0.865 9 C 0.116 3.884 10 C -0.268 4.268 11 C -0.068 4.068 12 C -0.278 4.278 13 C -0.001 4.001 14 C -0.166 4.166 15 C -0.130 4.130 16 C -0.188 4.188 17 C -0.049 4.049 18 C -0.066 4.066 19 Cl -0.159 7.159 20 C -0.090 4.090 21 H 0.113 0.887 22 H 0.119 0.881 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.264 -0.936 -3.220 4.680 hybrid contribution 0.000 -1.931 0.189 1.941 sum 3.264 -2.868 -3.031 5.298 Atomic orbital electron populations 1.70356 1.07980 1.34426 1.30051 1.27083 0.95877 1.03899 0.92318 0.83586 0.75787 0.73277 0.78381 1.19364 1.19954 1.20039 1.21394 1.00183 0.91486 1.42849 0.86473 1.18704 0.90291 0.90996 0.88457 1.21006 1.08232 0.97513 1.00056 1.20564 0.96063 0.93431 0.96789 1.20366 1.08074 0.99112 1.00207 1.17834 0.95316 0.92438 0.94487 1.20831 1.01399 0.98086 0.96269 1.20492 0.97754 0.97092 0.97626 1.20637 1.03409 0.93365 1.01398 1.19552 0.95897 0.94064 0.95351 1.24020 0.86261 1.01718 0.94622 1.98642 1.41405 1.98842 1.77047 1.19288 0.99172 0.95120 0.95397 0.88680 0.88138 0.89056 0.88588 0.87308 0.87553 0.87452 0.90543 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.49 13.30 55.56 0.74 -19.75 15 2 C 0.03 0.68 5.21 -17.30 -0.09 0.59 15 3 Si 1.07 20.71 29.95 -169.99 -5.09 15.62 15 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 7 C -0.53 -12.75 5.45 -38.03 -0.21 -12.96 15 8 H 0.12 2.70 3.56 -52.49 -0.19 2.52 15 9 C 0.12 2.94 5.03 -104.71 -0.53 2.41 15 10 C -0.25 -6.04 7.89 -38.75 -0.31 -6.35 15 11 C -0.05 -1.11 9.92 -39.82 -0.39 -1.51 15 12 C -0.26 -5.64 9.77 -38.88 -0.38 -6.02 15 13 C 0.00 -0.02 5.74 -106.88 -0.61 -0.63 15 14 C -0.15 -2.88 9.77 -39.41 -0.38 -3.26 15 15 C -0.11 -2.01 9.95 -39.95 -0.40 -2.41 15 16 C -0.17 -3.19 9.66 -39.47 -0.38 -3.57 15 17 C -0.05 -1.02 5.28 -104.34 -0.55 -1.57 15 18 C -0.01 -0.10 5.79 36.00 0.21 0.10 15 19 Cl -0.19 -3.61 26.56 -51.86 -1.38 -4.98 15 20 C -0.09 -2.11 5.90 -104.66 -0.62 -2.72 15 21 H 0.30 7.88 6.35 -40.82 -0.26 7.63 15 22 H 0.10 2.49 7.87 -52.48 -0.41 2.07 15 23 H 0.09 1.78 8.06 -52.48 -0.42 1.35 15 24 H 0.10 1.86 8.06 -52.49 -0.42 1.43 15 25 H 0.11 1.84 8.06 -52.49 -0.42 1.42 15 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 27 H 0.11 1.73 8.06 -52.48 -0.42 1.31 15 28 H 0.08 1.25 8.05 -51.93 -0.42 0.83 15 29 H 0.15 3.18 4.77 -51.93 -0.25 2.93 15 LS Contribution 257.38 15.07 3.88 3.88 Total: -1.00 -25.81 257.38 -8.93 -34.73 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.43 Total: 8.40 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: -4.64 Total: -37.89 kcal Atomic # 7 Polarization: -20.49 SS G_CDS: 0.74 Total: -19.75 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.09 Total: 15.62 kcal Atomic # 17 Polarization: -3.61 SS G_CDS: -1.38 Total: -4.98 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.81 -8.93 -34.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.714 kcal (2) G-P(sol) polarization free energy of solvation -25.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds