Wall clock time and date at job start Mon Mar 30 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86804 * 120.00248 * 2 1 4 4 H 1.48501 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47225 * 300.00671 * 3 2 1 6 6 H 1.48505 * 109.47007 * 60.00461 * 3 2 1 7 7 C 1.40153 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00422 * 162.77949 * 7 2 1 9 9 C 1.40455 * 120.00068 * 342.78058 * 7 2 1 10 10 C 1.40525 * 120.71272 * 334.59292 * 9 7 2 11 11 C 1.38156 * 120.42186 * 180.23312 * 10 9 7 12 12 C 1.50702 * 119.10224 * 179.97438 * 11 10 9 13 13 Cl 1.80306 * 109.47028 * 90.06406 * 12 11 10 14 14 C 1.37667 * 121.79696 * 0.06299 * 11 10 9 15 15 C 1.40653 * 120.79448 * 359.95955 * 14 11 10 16 16 C 1.40505 * 121.16297 * 180.02562 * 15 14 11 17 17 C 1.36339 * 119.76883 * 179.97438 * 16 15 14 18 18 C 1.39087 * 120.93137 * 359.97438 * 17 16 15 19 19 C 1.37685 * 120.71239 * 359.97438 * 18 17 16 20 20 C 1.39533 * 119.55847 * 0.03841 * 19 18 17 21 21 H 0.97005 * 119.99613 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.78790 * 0.27750 * 10 9 7 23 23 H 1.08996 * 109.47322 * 210.06234 * 12 11 10 24 24 H 1.08994 * 109.47075 * 330.06703 * 12 11 10 25 25 H 1.08001 * 119.60785 * 179.97438 * 14 11 10 26 26 H 1.07998 * 120.12145 * 359.97438 * 16 15 14 27 27 H 1.07997 * 119.53769 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.64154 * 180.02562 * 18 17 16 29 29 H 1.07995 * 120.22236 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0081 -1.2138 -0.0005 8 1 3.0518 -1.2347 -0.2774 9 6 1.3531 -2.4030 0.3590 10 6 0.2273 -2.3765 1.1997 11 6 -0.4095 -3.5504 1.5534 12 6 -1.6139 -3.4873 2.4571 13 17 -3.1065 -3.3244 1.4587 14 6 0.0272 -4.7763 1.1043 15 6 1.1479 -4.8766 0.2605 16 6 1.6000 -6.1236 -0.2028 17 6 2.6893 -6.1878 -1.0203 18 6 3.3632 -5.0336 -1.4052 19 6 2.9447 -3.7965 -0.9693 20 6 1.8328 -3.7017 -0.1316 21 1 -0.4850 0.8401 0.0004 22 1 -0.1428 -1.4323 1.5710 23 1 -1.6714 -4.4000 3.0501 24 1 -1.5253 -2.6275 3.1210 25 1 -0.4972 -5.6718 1.4034 26 1 1.0865 -7.0283 0.0875 27 1 3.0338 -7.1483 -1.3738 28 1 4.2234 -5.1086 -2.0538 29 1 3.4736 -2.9054 -1.2735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238527081.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:35 Heat of formation + Delta-G solvation = 6.238345 kcal Electronic energy + Delta-G solvation = -14860.923242 eV Core-core repulsion = 12352.264113 eV Total energy + Delta-G solvation = -2508.659129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.79262 -35.92281 -35.08848 -33.96018 -31.39440 -30.21328 -28.38578 -26.00498 -25.18676 -21.94685 -20.92837 -20.41833 -17.24988 -16.09678 -16.04315 -15.05178 -14.61843 -13.68287 -13.58328 -13.42970 -13.06062 -12.59427 -12.20191 -12.10779 -11.94639 -11.63567 -11.39436 -10.92712 -10.82039 -10.56807 -10.14768 -9.93383 -9.77406 -9.54670 -9.45380 -9.32493 -8.53379 -7.39822 -7.11544 -6.84113 -4.49536 1.68703 2.24864 2.79158 2.92119 2.93799 2.97429 3.41519 3.69528 4.20198 4.63006 5.48976 5.56100 5.58195 5.75821 5.86085 5.92478 6.04240 6.30799 6.40522 6.56310 6.70128 6.81736 6.91625 7.13554 7.28450 7.37983 7.45378 7.55239 7.80990 7.85799 8.02768 8.10399 8.37286 8.53674 8.69926 9.81842 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.011359 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.839149 B = 2464.401163 C = 4272.478245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.423 4.423 8 H 0.088 0.912 9 C 0.125 3.875 10 C -0.208 4.208 11 C -0.041 4.041 12 C 0.022 3.978 13 Cl -0.197 7.197 14 C -0.261 4.261 15 C 0.007 3.993 16 C -0.155 4.155 17 C -0.112 4.112 18 C -0.195 4.195 19 C -0.064 4.064 20 C -0.116 4.116 21 H 0.288 0.712 22 H 0.119 0.881 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -2.028 2.081 3.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.152 4.152 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.449 4.449 8 H 0.106 0.894 9 C 0.121 3.879 10 C -0.228 4.228 11 C -0.041 4.041 12 C -0.040 4.040 13 Cl -0.170 7.170 14 C -0.281 4.281 15 C 0.007 3.993 16 C -0.174 4.174 17 C -0.130 4.130 18 C -0.214 4.214 19 C -0.082 4.082 20 C -0.117 4.117 21 H 0.100 0.900 22 H 0.137 0.863 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.472 -1.839 1.997 2.755 hybrid contribution 0.143 0.681 -0.130 0.708 sum 0.615 -1.158 1.867 2.281 Atomic orbital electron populations 1.69815 1.07817 1.30177 1.29803 1.26117 0.94877 1.01906 0.92343 0.86150 0.81061 0.80100 0.79007 1.17956 1.19539 1.19275 1.19682 0.98167 0.90934 1.36125 0.89394 1.18562 0.91133 0.90075 0.88095 1.20821 1.01461 0.95868 1.04696 1.19159 0.93517 0.94393 0.97055 1.23191 0.84149 1.03356 0.93341 1.98690 1.43642 1.98748 1.75952 1.20036 1.02300 0.95449 1.10290 1.17697 0.94347 0.91969 0.95242 1.20745 0.98694 0.96372 1.01545 1.20490 0.96488 0.97233 0.98823 1.20686 1.02261 0.92864 1.05551 1.21070 0.95015 0.96656 0.95462 1.19221 0.97959 0.93352 1.01138 0.90043 0.86320 0.89677 0.89350 0.89007 0.87709 0.88139 0.87987 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.06 10.99 55.56 0.61 -17.45 15 2 C 0.07 1.62 5.15 -17.30 -0.09 1.53 15 3 Si 0.91 17.00 29.59 -169.99 -5.03 11.97 15 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 15 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 7 C -0.42 -10.27 8.49 -38.03 -0.32 -10.59 15 8 H 0.09 2.02 6.73 -52.49 -0.35 1.67 15 9 C 0.12 3.15 5.72 -104.71 -0.60 2.55 15 10 C -0.21 -5.12 8.30 -38.75 -0.32 -5.44 15 11 C -0.04 -0.90 5.23 -104.86 -0.55 -1.45 15 12 C 0.02 0.40 6.73 36.01 0.24 0.64 15 13 Cl -0.20 -3.72 29.13 -51.86 -1.51 -5.24 15 14 C -0.26 -5.84 9.36 -38.88 -0.36 -6.20 15 15 C 0.01 0.17 5.74 -106.88 -0.61 -0.44 15 16 C -0.16 -3.17 9.77 -39.41 -0.38 -3.55 15 17 C -0.11 -2.12 9.95 -39.95 -0.40 -2.52 15 18 C -0.20 -3.79 10.02 -39.47 -0.40 -4.19 15 19 C -0.06 -1.39 9.46 -39.30 -0.37 -1.76 15 20 C -0.12 -2.81 5.90 -104.66 -0.62 -3.43 15 21 H 0.29 6.22 8.29 -40.82 -0.34 5.88 15 22 H 0.12 2.98 6.20 -52.49 -0.33 2.66 15 23 H 0.08 1.34 8.06 -51.93 -0.42 0.92 15 24 H 0.09 1.50 8.06 -51.93 -0.42 1.08 15 25 H 0.09 1.87 8.06 -52.49 -0.42 1.45 15 26 H 0.10 1.89 8.06 -52.49 -0.42 1.46 15 27 H 0.10 1.58 8.06 -52.49 -0.42 1.15 15 28 H 0.10 1.69 8.06 -52.49 -0.42 1.26 15 29 H 0.12 2.37 6.66 -52.49 -0.35 2.02 15 LS Contribution 267.09 15.07 4.02 4.02 Total: -1.00 -26.03 267.09 -9.38 -35.41 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -2.69 Total: 6.14 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: -4.78 Total: -34.85 kcal Atomic # 7 Polarization: -18.06 SS G_CDS: 0.61 Total: -17.45 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 17 Polarization: -3.72 SS G_CDS: -1.51 Total: -5.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.03 -9.38 -35.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238527081.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.644 kcal (2) G-P(sol) polarization free energy of solvation -26.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds