Wall clock time and date at job start Mon Mar 30 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86804 * 120.00248 * 2 1 4 4 H 1.48501 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47225 * 300.00671 * 3 2 1 6 6 H 1.48505 * 109.47007 * 60.00461 * 3 2 1 7 7 C 1.40153 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00422 * 162.77949 * 7 2 1 9 9 C 1.40455 * 120.00068 * 342.78058 * 7 2 1 10 10 C 1.40525 * 120.71272 * 334.59292 * 9 7 2 11 11 C 1.38156 * 120.42186 * 180.23312 * 10 9 7 12 12 C 1.50702 * 119.10224 * 179.97438 * 11 10 9 13 13 Cl 1.80306 * 109.47028 * 90.06406 * 12 11 10 14 14 C 1.37667 * 121.79696 * 0.06299 * 11 10 9 15 15 C 1.40653 * 120.79448 * 359.95955 * 14 11 10 16 16 C 1.40505 * 121.16297 * 180.02562 * 15 14 11 17 17 C 1.36339 * 119.76883 * 179.97438 * 16 15 14 18 18 C 1.39087 * 120.93137 * 359.97438 * 17 16 15 19 19 C 1.37685 * 120.71239 * 359.97438 * 18 17 16 20 20 C 1.39533 * 119.55847 * 0.03841 * 19 18 17 21 21 H 0.97005 * 119.99613 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.78790 * 0.27750 * 10 9 7 23 23 H 1.08996 * 109.47322 * 210.06234 * 12 11 10 24 24 H 1.08994 * 109.47075 * 330.06703 * 12 11 10 25 25 H 1.08001 * 119.60785 * 179.97438 * 14 11 10 26 26 H 1.07998 * 120.12145 * 359.97438 * 16 15 14 27 27 H 1.07997 * 119.53769 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.64154 * 180.02562 * 18 17 16 29 29 H 1.07995 * 120.22236 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0081 -1.2138 -0.0005 8 1 3.0518 -1.2347 -0.2774 9 6 1.3531 -2.4030 0.3590 10 6 0.2273 -2.3765 1.1997 11 6 -0.4095 -3.5504 1.5534 12 6 -1.6139 -3.4873 2.4571 13 17 -3.1065 -3.3244 1.4587 14 6 0.0272 -4.7763 1.1043 15 6 1.1479 -4.8766 0.2605 16 6 1.6000 -6.1236 -0.2028 17 6 2.6893 -6.1878 -1.0203 18 6 3.3632 -5.0336 -1.4052 19 6 2.9447 -3.7965 -0.9693 20 6 1.8328 -3.7017 -0.1316 21 1 -0.4850 0.8401 0.0004 22 1 -0.1428 -1.4323 1.5710 23 1 -1.6714 -4.4000 3.0501 24 1 -1.5253 -2.6275 3.1210 25 1 -0.4972 -5.6718 1.4034 26 1 1.0865 -7.0283 0.0875 27 1 3.0338 -7.1483 -1.3738 28 1 4.2234 -5.1086 -2.0538 29 1 3.4736 -2.9054 -1.2735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238527081.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:35 Heat of formation + Delta-G solvation = -4.544784 kcal Electronic energy + Delta-G solvation = -14861.390834 eV Core-core repulsion = 12352.264113 eV Total energy + Delta-G solvation = -2509.126721 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45992 -37.52552 -36.67143 -35.63303 -33.08643 -31.82589 -30.06132 -27.66723 -26.84961 -23.62584 -22.56247 -22.11227 -18.98121 -17.74834 -17.68046 -16.65606 -16.26590 -15.20838 -15.16667 -14.99224 -14.63171 -14.18872 -13.87841 -13.76353 -13.53493 -13.25795 -12.94497 -12.55435 -12.44824 -12.07602 -11.73087 -11.58880 -11.30525 -11.17479 -11.10608 -10.97033 -10.23490 -9.09405 -8.81969 -8.54609 -6.30037 0.03372 0.57351 1.25417 1.37510 1.39843 1.53151 1.78744 2.14352 2.54182 2.93237 3.80064 3.95790 4.11634 4.27318 4.32812 4.43337 4.53609 4.72001 4.75409 4.93471 5.00663 5.14161 5.21430 5.49750 5.59616 5.68521 5.82209 5.88095 6.06558 6.13995 6.27013 6.43698 6.62935 6.77336 6.94002 8.15676 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.011359 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.839149 B = 2464.401163 C = 4272.478245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.088 0.912 9 C 0.094 3.906 10 C -0.234 4.234 11 C -0.049 4.049 12 C 0.027 3.973 13 Cl -0.201 7.201 14 C -0.263 4.263 15 C -0.022 4.022 16 C -0.158 4.158 17 C -0.109 4.109 18 C -0.180 4.180 19 C -0.089 4.089 20 C -0.145 4.145 21 H 0.294 0.706 22 H 0.103 0.897 23 H 0.115 0.885 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.131 0.869 27 H 0.144 0.856 28 H 0.137 0.863 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -3.420 1.800 4.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.482 4.482 8 H 0.106 0.894 9 C 0.091 3.909 10 C -0.255 4.255 11 C -0.050 4.050 12 C -0.035 4.035 13 Cl -0.175 7.175 14 C -0.282 4.282 15 C -0.023 4.023 16 C -0.176 4.176 17 C -0.127 4.127 18 C -0.198 4.198 19 C -0.107 4.107 20 C -0.145 4.145 21 H 0.106 0.894 22 H 0.121 0.879 23 H 0.133 0.867 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.149 0.851 27 H 0.161 0.839 28 H 0.155 0.845 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.271 -3.250 1.717 3.889 hybrid contribution -0.065 0.884 -0.098 0.891 sum 1.207 -2.366 1.619 3.111 Atomic orbital electron populations 1.69866 1.09261 1.31320 1.30999 1.26932 0.95495 1.04794 0.91272 0.85095 0.79604 0.75622 0.79159 1.17650 1.18924 1.18672 1.19884 0.98424 0.91850 1.38034 0.89368 1.18973 0.91972 0.91210 0.88765 1.20797 1.02510 0.96139 1.06011 1.19445 0.94517 0.93709 0.97285 1.23255 0.82316 1.05382 0.92583 1.98688 1.43658 1.98825 1.76334 1.20391 1.02080 0.96172 1.09569 1.18116 0.95019 0.92957 0.96159 1.21104 0.99185 0.96110 1.01231 1.20979 0.95401 0.98858 0.97473 1.21152 1.02476 0.91993 1.04192 1.21230 0.95149 0.98099 0.96256 1.19560 0.99252 0.93521 1.02204 0.89441 0.87939 0.86665 0.88435 0.86891 0.85089 0.83873 0.84537 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.43 10.99 21.86 0.24 -39.19 15 2 C 0.03 1.63 5.15 85.32 0.44 2.07 15 3 Si 0.99 35.55 29.59 68.60 2.03 37.58 15 4 H -0.25 -8.88 7.11 99.48 0.71 -8.17 15 5 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 7 C -0.46 -23.12 8.49 23.28 0.20 -22.92 15 8 H 0.09 4.25 6.73 -2.91 -0.02 4.23 15 9 C 0.09 4.95 5.72 -19.92 -0.11 4.84 15 10 C -0.23 -11.98 8.30 22.81 0.19 -11.79 15 11 C -0.05 -2.19 5.23 -20.02 -0.10 -2.30 15 12 C 0.03 0.95 6.73 71.24 0.48 1.43 15 13 Cl -0.20 -7.51 29.13 -2.72 -0.08 -7.59 15 14 C -0.26 -11.56 9.36 22.72 0.21 -11.35 15 15 C -0.02 -1.03 5.74 -21.32 -0.12 -1.15 15 16 C -0.16 -6.02 9.77 22.38 0.22 -5.80 15 17 C -0.11 -3.71 9.95 22.03 0.22 -3.49 15 18 C -0.18 -6.49 10.02 22.34 0.22 -6.27 15 19 C -0.09 -3.87 9.46 22.45 0.21 -3.66 15 20 C -0.14 -7.14 5.90 -19.89 -0.12 -7.26 15 21 H 0.29 13.16 8.29 -92.70 -0.77 12.39 15 22 H 0.10 5.44 6.20 -2.91 -0.02 5.42 15 23 H 0.12 3.39 8.06 -2.39 -0.02 3.37 15 24 H 0.10 3.28 8.06 -2.39 -0.02 3.26 15 25 H 0.11 4.37 8.06 -2.91 -0.02 4.34 15 26 H 0.13 4.21 8.06 -2.91 -0.02 4.19 15 27 H 0.14 3.66 8.06 -2.91 -0.02 3.64 15 28 H 0.14 3.94 8.06 -2.91 -0.02 3.92 15 29 H 0.12 4.85 6.66 -2.91 -0.02 4.83 15 Total: -1.00 -57.62 267.09 5.29 -52.33 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 1.16 Total: 24.52 kcal Atomic # 6 Polarization: -69.58 SS G_CDS: 1.93 Total: -67.65 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.24 Total: -39.19 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Atomic # 17 Polarization: -7.51 SS G_CDS: -0.08 Total: -7.59 kcal Total: -57.62 5.29 -52.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238527081.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.790 kcal (2) G-P(sol) polarization free energy of solvation -57.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds