Wall clock time and date at job start Mon Mar 30 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30808 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48506 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47274 * 299.99644 * 3 2 1 6 6 H 1.48494 * 109.47399 * 59.99788 * 3 2 1 7 7 C 1.39968 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00226 * 163.22725 * 7 2 1 9 9 C 1.41165 * 120.00059 * 343.23159 * 7 2 1 10 10 C 1.40039 * 119.86885 * 333.64845 * 9 7 2 11 11 C 1.39920 * 119.33881 * 180.02562 * 10 9 7 12 12 C 1.40850 * 121.04001 * 179.97438 * 11 10 9 13 13 C 1.36154 * 119.64170 * 180.02562 * 12 11 10 14 14 C 1.39300 * 120.91809 * 0.02562 * 13 12 11 15 15 C 1.36385 * 121.03358 * 359.97438 * 14 13 12 16 16 C 1.40207 * 119.79048 * 0.02562 * 15 14 13 17 17 C 1.41073 * 120.90469 * 179.97438 * 16 15 14 18 18 C 1.35320 * 120.21262 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.62095 * 179.97438 * 18 17 16 20 20 Cl 1.80299 * 109.47168 * 270.02380 * 19 18 17 21 21 H 0.96999 * 120.00312 * 0.02562 * 1 2 3 22 22 H 1.07991 * 120.33273 * 359.97438 * 10 9 7 23 23 H 1.08001 * 120.17736 * 0.02562 * 12 11 10 24 24 H 1.07993 * 119.53993 * 179.97438 * 13 12 11 25 25 H 1.07995 * 119.47874 * 180.02562 * 14 13 12 26 26 H 1.08001 * 120.10867 * 180.27314 * 15 14 13 27 27 H 1.07997 * 119.88782 * 0.02562 * 17 16 15 28 28 H 1.09002 * 109.46967 * 30.02173 * 19 18 17 29 29 H 1.08995 * 109.46469 * 150.02191 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2126 6 1 1.8833 2.3965 1.2124 7 6 2.0080 -1.2121 0.0005 8 1 3.0535 -1.2321 -0.2694 9 6 1.3472 -2.4085 0.3538 10 6 0.2331 -2.3660 1.2011 11 6 -0.4131 -3.5586 1.5445 12 6 -1.5363 -3.5574 2.3943 13 6 -2.1429 -4.7347 2.7103 14 6 -1.6679 -5.9428 2.2050 15 6 -0.5829 -5.9817 1.3795 16 6 0.0698 -4.7909 1.0304 17 6 1.1944 -4.8039 0.1787 18 6 1.8139 -3.6463 -0.1487 19 6 3.0146 -3.6756 -1.0591 20 17 4.5130 -3.8518 -0.0720 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1233 -1.4222 1.5863 23 1 -1.9144 -2.6277 2.7931 24 1 -3.0037 -4.7320 3.3623 25 1 -2.1671 -6.8629 2.4704 26 1 -0.2299 -6.9263 0.9928 27 1 1.5620 -5.7407 -0.2130 28 1 2.9300 -4.5187 -1.7448 29 1 3.0615 -2.7474 -1.6284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238528602.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:48 Heat of formation + Delta-G solvation = 7.901302 kcal Electronic energy + Delta-G solvation = -14896.541822 eV Core-core repulsion = 12387.954804 eV Total energy + Delta-G solvation = -2508.587018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.02955 -36.26451 -35.00031 -33.59735 -31.40356 -30.47880 -28.74540 -25.68016 -25.39351 -21.78853 -20.93466 -20.52447 -17.71286 -16.10492 -15.74857 -14.97101 -14.58227 -13.73507 -13.66203 -13.57214 -12.95723 -12.49505 -12.26776 -12.22935 -12.00689 -11.60691 -11.25668 -10.97226 -10.85121 -10.55916 -10.14020 -9.93949 -9.79488 -9.56049 -9.38764 -9.24885 -8.73931 -7.46489 -6.94017 -6.82548 -4.48086 1.59946 2.18331 2.91548 2.94121 3.00757 3.06246 3.49547 3.81310 4.02951 4.74846 5.47525 5.57205 5.65961 5.71010 5.76909 5.97849 6.02382 6.17139 6.30337 6.57311 6.63283 6.86392 6.94253 7.00746 7.21282 7.34583 7.42928 7.48463 7.64272 7.85319 8.00374 8.09599 8.44147 8.66102 8.72918 9.99677 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.009728 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.013066 B = 2877.541697 C = 4228.199222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.119 3.881 10 C -0.196 4.196 11 C -0.003 4.003 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.190 4.190 15 C -0.077 4.077 16 C -0.139 4.139 17 C -0.075 4.075 18 C -0.153 4.153 19 C 0.033 3.967 20 Cl -0.211 7.211 21 H 0.283 0.717 22 H 0.124 0.876 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 -3.550 -0.396 3.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.004 4.004 12 C -0.152 4.152 13 C -0.138 4.138 14 C -0.208 4.208 15 C -0.095 4.095 16 C -0.140 4.140 17 C -0.094 4.094 18 C -0.154 4.154 19 C -0.029 4.029 20 Cl -0.185 7.185 21 H 0.094 0.906 22 H 0.141 0.859 23 H 0.127 0.873 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.851 -3.389 -0.363 3.513 hybrid contribution 0.248 0.749 0.034 0.789 sum 1.099 -2.641 -0.329 2.879 Atomic orbital electron populations 1.69823 1.07673 1.29568 1.33046 1.25956 0.94750 1.01545 0.92269 0.86270 0.81222 0.80726 0.78754 1.18057 1.19851 1.19514 1.19717 0.97917 0.90933 1.38893 0.89570 1.17356 0.91519 0.90836 0.88655 1.21268 1.00990 0.95677 1.03650 1.18026 0.94086 0.93259 0.94994 1.20946 0.96871 0.97169 1.00220 1.20511 0.99639 0.93032 1.00601 1.20330 0.99953 0.96908 1.03641 1.20762 0.95331 0.96419 0.96999 1.17663 0.99146 0.92852 1.04321 1.20426 0.95217 0.96342 0.97400 1.19546 0.98124 0.94593 1.03182 1.23050 0.82869 1.04038 0.92975 1.98680 1.44448 1.98540 1.76803 0.90559 0.85876 0.87334 0.88083 0.88181 0.87790 0.88109 0.90169 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.93 10.99 55.55 0.61 -18.32 15 2 C 0.07 1.75 5.13 -17.34 -0.09 1.66 15 3 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 5 H -0.27 -5.25 7.11 56.52 0.40 -4.84 15 6 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 7 C -0.45 -10.83 8.06 -37.82 -0.30 -11.13 15 8 H 0.09 2.02 6.84 -52.49 -0.36 1.66 15 9 C 0.12 2.94 5.56 -106.87 -0.59 2.35 15 10 C -0.20 -4.93 8.42 -38.28 -0.32 -5.25 15 11 C 0.00 -0.08 5.74 -106.84 -0.61 -0.69 15 12 C -0.13 -2.82 9.77 -39.34 -0.38 -3.21 15 13 C -0.12 -2.25 9.95 -39.94 -0.40 -2.64 15 14 C -0.19 -3.48 9.95 -39.85 -0.40 -3.87 15 15 C -0.08 -1.49 9.74 -39.51 -0.39 -1.87 15 16 C -0.14 -3.07 5.75 -106.65 -0.61 -3.69 15 17 C -0.08 -1.58 9.31 -39.55 -0.37 -1.95 15 18 C -0.15 -3.36 5.26 -104.42 -0.55 -3.91 15 19 C 0.03 0.60 6.12 36.01 0.22 0.82 15 20 Cl -0.21 -3.90 29.13 -51.86 -1.51 -5.41 15 21 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 22 H 0.12 3.21 6.22 -52.49 -0.33 2.89 15 23 H 0.11 2.14 8.06 -52.49 -0.42 1.72 15 24 H 0.10 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.10 1.54 8.06 -52.49 -0.42 1.12 15 26 H 0.10 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.10 1.83 8.06 -52.49 -0.42 1.41 15 28 H 0.08 1.27 8.07 -51.93 -0.42 0.85 15 29 H 0.10 1.90 6.72 -51.93 -0.35 1.55 15 LS Contribution 266.26 15.07 4.01 4.01 Total: -1.00 -25.75 266.26 -9.42 -35.17 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -2.70 Total: 5.28 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: -4.80 Total: -33.39 kcal Atomic # 7 Polarization: -18.93 SS G_CDS: 0.61 Total: -18.32 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 17 Polarization: -3.90 SS G_CDS: -1.51 Total: -5.41 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.75 -9.42 -35.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238528602.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.068 kcal (2) G-P(sol) polarization free energy of solvation -25.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds