Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00434 * 2 1 4 4 H 1.48498 * 109.47263 * 240.00105 * 3 2 1 5 5 H 1.48507 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47662 * 119.99502 * 3 2 1 7 7 C 1.40154 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00360 * 195.02810 * 7 2 1 9 9 C 1.40449 * 119.99836 * 15.03071 * 7 2 1 10 10 C 1.40537 * 120.71883 * 25.38928 * 9 7 2 11 11 C 1.38156 * 120.42030 * 180.23100 * 10 9 7 12 12 C 1.37672 * 121.79796 * 359.46310 * 11 10 9 13 13 C 1.40642 * 120.79788 * 0.28630 * 12 11 10 14 14 C 1.40508 * 121.17558 * 179.97438 * 13 12 11 15 15 C 1.36330 * 119.77234 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.53230 * 179.97438 * 15 14 13 17 17 Cl 1.80305 * 109.47492 * 269.99867 * 16 15 14 18 18 C 1.39077 * 120.93436 * 359.97438 * 15 14 13 19 19 C 1.37678 * 120.71497 * 0.02562 * 18 15 14 20 20 C 1.39537 * 119.55698 * 359.97420 * 19 18 15 21 21 H 0.97002 * 119.99345 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.78616 * 359.95286 * 10 9 7 23 23 H 1.07999 * 119.09583 * 179.74865 * 11 10 9 24 24 H 1.08002 * 119.59684 * 180.25084 * 12 11 10 25 25 H 1.08004 * 120.11115 * 359.97438 * 14 13 12 26 26 H 1.09005 * 109.47579 * 30.00402 * 16 15 14 27 27 H 1.09003 * 109.47383 * 149.99866 * 16 15 14 28 28 H 1.08001 * 119.64609 * 179.97438 * 18 15 14 29 29 H 1.08000 * 120.22682 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0081 -1.2138 0.0005 8 1 3.0604 -1.2297 0.2431 9 6 1.3419 -2.4094 -0.3144 10 6 0.1886 -2.3986 -1.1174 11 6 -0.4646 -3.5779 -1.4194 12 6 -0.0128 -4.7952 -0.9618 13 6 1.1380 -4.8802 -0.1578 14 6 1.6058 -6.1183 0.3140 15 6 2.7249 -6.1676 1.0911 16 6 3.2215 -7.4983 1.5946 17 17 2.4598 -7.8602 3.1883 18 6 3.4146 -5.0072 1.4257 19 6 2.9821 -3.7786 0.9794 20 6 1.8396 -3.6989 0.1824 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1919 -1.4619 -1.4972 23 1 -1.3513 -3.5443 -2.0351 24 1 -0.5490 -5.6956 -1.2230 25 1 1.0807 -7.0277 0.0618 26 1 2.9580 -8.2784 0.8804 27 1 4.3048 -7.4620 1.7096 28 1 4.2985 -5.0703 2.0430 29 1 3.5236 -2.8825 1.2444 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238530820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = 6.218922 kcal Electronic energy + Delta-G solvation = -14665.507840 eV Core-core repulsion = 12156.847868 eV Total energy + Delta-G solvation = -2508.659971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.90514 -36.13732 -35.24487 -33.78693 -31.65305 -30.16332 -28.66564 -25.76184 -25.31047 -22.14412 -20.81215 -20.50751 -17.41768 -16.13346 -15.78045 -15.07383 -14.86768 -14.09729 -13.67850 -13.48700 -13.06772 -12.63100 -12.26210 -12.17037 -11.93777 -11.56831 -11.38928 -11.10614 -10.81260 -10.62635 -10.26480 -10.14119 -9.93543 -9.59047 -9.46615 -9.42511 -8.53757 -7.42004 -7.08978 -6.85221 -4.49875 1.64459 2.03424 2.78429 2.90622 2.91449 2.94204 3.34434 3.69606 4.16150 4.61395 5.09401 5.13021 5.52138 5.61168 5.79444 5.89837 6.21675 6.31656 6.36402 6.53042 6.68762 6.79436 6.93014 7.10411 7.26628 7.35801 7.39826 7.53499 7.81881 7.89924 8.06676 8.08999 8.42464 8.56942 8.74064 9.83640 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.006152 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.162025 B = 4550.068676 C = 5162.478371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.424 4.424 8 H 0.087 0.913 9 C 0.123 3.877 10 C -0.227 4.227 11 C -0.051 4.051 12 C -0.280 4.280 13 C 0.005 3.995 14 C -0.128 4.128 15 C -0.104 4.104 16 C 0.021 3.979 17 Cl -0.196 7.196 18 C -0.179 4.179 19 C -0.061 4.061 20 C -0.113 4.113 21 H 0.288 0.712 22 H 0.119 0.881 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -5.141 0.834 6.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.451 4.451 8 H 0.105 0.895 9 C 0.120 3.880 10 C -0.247 4.247 11 C -0.069 4.069 12 C -0.299 4.299 13 C 0.005 3.995 14 C -0.147 4.147 15 C -0.104 4.104 16 C -0.041 4.041 17 Cl -0.169 7.169 18 C -0.198 4.198 19 C -0.080 4.080 20 C -0.114 4.114 21 H 0.099 0.901 22 H 0.137 0.863 23 H 0.104 0.896 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.109 -4.998 0.974 6.543 hybrid contribution 0.131 0.692 0.118 0.714 sum 4.240 -4.306 1.092 6.141 Atomic orbital electron populations 1.69791 1.07884 1.30200 1.30619 1.26114 0.94910 1.01922 0.92263 0.86200 0.80145 0.79239 0.80402 1.18393 1.19929 1.18538 1.19629 0.97460 0.90799 1.37239 0.89543 1.18620 0.91546 0.89961 0.87859 1.21071 1.01131 0.96841 1.05609 1.20562 0.96810 0.93087 0.96465 1.20229 1.01547 0.96489 1.11678 1.17701 0.94518 0.91648 0.95596 1.20627 0.96651 0.96868 1.00517 1.19048 0.97698 0.93127 1.00512 1.23163 0.98899 0.97066 0.84963 1.98710 1.85529 1.95630 1.37071 1.20469 1.01737 0.92118 1.05444 1.21036 0.94970 0.96554 0.95400 1.19250 0.97227 0.93512 1.01362 0.90062 0.86300 0.89560 0.89186 0.87482 0.88960 0.88904 0.87768 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.40 10.86 55.56 0.60 -17.80 15 2 C 0.07 1.62 5.20 -17.30 -0.09 1.53 15 3 Si 0.92 17.14 29.59 -169.99 -5.03 12.11 15 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 5 H -0.27 -5.01 7.11 56.52 0.40 -4.60 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.42 -10.42 8.51 -38.03 -0.32 -10.75 15 8 H 0.09 1.99 6.71 -52.49 -0.35 1.63 15 9 C 0.12 3.16 5.73 -104.70 -0.60 2.56 15 10 C -0.23 -5.76 8.69 -38.75 -0.34 -6.09 15 11 C -0.05 -1.19 9.92 -39.82 -0.39 -1.58 15 12 C -0.28 -6.41 9.77 -38.88 -0.38 -6.79 15 13 C 0.01 0.12 5.74 -106.88 -0.61 -0.49 15 14 C -0.13 -2.55 9.37 -39.41 -0.37 -2.92 15 15 C -0.10 -1.87 5.22 -105.00 -0.55 -2.42 15 16 C 0.02 0.30 6.75 36.00 0.24 0.54 15 17 Cl -0.20 -2.96 29.13 -51.86 -1.51 -4.47 15 18 C -0.18 -3.39 9.65 -39.47 -0.38 -3.77 15 19 C -0.06 -1.32 9.46 -39.30 -0.37 -1.69 15 20 C -0.11 -2.73 5.90 -104.66 -0.62 -3.35 15 21 H 0.29 6.26 8.29 -40.82 -0.34 5.92 15 22 H 0.12 3.07 6.12 -52.49 -0.32 2.75 15 23 H 0.09 1.79 8.06 -52.49 -0.42 1.37 15 24 H 0.09 1.85 8.06 -52.49 -0.42 1.43 15 25 H 0.11 1.90 8.06 -52.48 -0.42 1.48 15 26 H 0.09 1.12 8.07 -51.93 -0.42 0.70 15 27 H 0.09 1.11 8.08 -51.93 -0.42 0.69 15 28 H 0.10 1.70 8.06 -52.49 -0.42 1.27 15 29 H 0.12 2.39 6.65 -52.49 -0.35 2.04 15 LS Contribution 266.96 15.07 4.02 4.02 Total: -1.00 -26.12 266.96 -9.38 -35.51 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.69 Total: 5.84 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: -4.78 Total: -35.21 kcal Atomic # 7 Polarization: -18.40 SS G_CDS: 0.60 Total: -17.80 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -1.51 Total: -4.47 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.12 -9.38 -35.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238530820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.725 kcal (2) G-P(sol) polarization free energy of solvation -26.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds