Wall clock time and date at job start Mon Mar 30 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00434 * 2 1 4 4 H 1.48498 * 109.47263 * 240.00105 * 3 2 1 5 5 H 1.48507 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47662 * 119.99502 * 3 2 1 7 7 C 1.40154 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00360 * 195.02810 * 7 2 1 9 9 C 1.40449 * 119.99836 * 15.03071 * 7 2 1 10 10 C 1.40537 * 120.71883 * 25.38928 * 9 7 2 11 11 C 1.38156 * 120.42030 * 180.23100 * 10 9 7 12 12 C 1.37672 * 121.79796 * 359.46310 * 11 10 9 13 13 C 1.40642 * 120.79788 * 0.28630 * 12 11 10 14 14 C 1.40508 * 121.17558 * 179.97438 * 13 12 11 15 15 C 1.36330 * 119.77234 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.53230 * 179.97438 * 15 14 13 17 17 Cl 1.80305 * 109.47492 * 269.99867 * 16 15 14 18 18 C 1.39077 * 120.93436 * 359.97438 * 15 14 13 19 19 C 1.37678 * 120.71497 * 0.02562 * 18 15 14 20 20 C 1.39537 * 119.55698 * 359.97420 * 19 18 15 21 21 H 0.97002 * 119.99345 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.78616 * 359.95286 * 10 9 7 23 23 H 1.07999 * 119.09583 * 179.74865 * 11 10 9 24 24 H 1.08002 * 119.59684 * 180.25084 * 12 11 10 25 25 H 1.08004 * 120.11115 * 359.97438 * 14 13 12 26 26 H 1.09005 * 109.47579 * 30.00402 * 16 15 14 27 27 H 1.09003 * 109.47383 * 149.99866 * 16 15 14 28 28 H 1.08001 * 119.64609 * 179.97438 * 18 15 14 29 29 H 1.08000 * 120.22682 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0081 -1.2138 0.0005 8 1 3.0604 -1.2297 0.2431 9 6 1.3419 -2.4094 -0.3144 10 6 0.1886 -2.3986 -1.1174 11 6 -0.4646 -3.5779 -1.4194 12 6 -0.0128 -4.7952 -0.9618 13 6 1.1380 -4.8802 -0.1578 14 6 1.6058 -6.1183 0.3140 15 6 2.7249 -6.1676 1.0911 16 6 3.2215 -7.4983 1.5946 17 17 2.4598 -7.8602 3.1883 18 6 3.4146 -5.0072 1.4257 19 6 2.9821 -3.7786 0.9794 20 6 1.8396 -3.6989 0.1824 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1919 -1.4619 -1.4972 23 1 -1.3513 -3.5443 -2.0351 24 1 -0.5490 -5.6956 -1.2230 25 1 1.0807 -7.0277 0.0618 26 1 2.9580 -8.2784 0.8804 27 1 4.3048 -7.4620 1.7096 28 1 4.2985 -5.0703 2.0430 29 1 3.5236 -2.8825 1.2444 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238530820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:12 Heat of formation + Delta-G solvation = -4.812661 kcal Electronic energy + Delta-G solvation = -14665.986205 eV Core-core repulsion = 12156.847868 eV Total energy + Delta-G solvation = -2509.138337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55935 -37.64261 -36.60056 -35.50517 -33.29169 -31.77097 -30.36575 -27.26455 -27.01809 -23.79536 -22.49635 -22.19028 -19.16818 -17.79701 -17.47227 -16.65465 -16.43040 -15.30889 -15.19954 -15.04239 -14.54472 -14.25835 -13.84776 -13.82163 -13.51663 -13.17819 -13.02564 -12.67668 -12.44540 -12.13467 -11.66635 -11.61851 -11.30747 -11.17933 -11.14565 -11.12766 -10.24337 -9.14108 -8.81693 -8.58546 -6.33656 0.02912 0.42895 1.23427 1.36981 1.49523 1.57881 1.69961 2.13344 2.46811 2.92326 3.73497 3.79903 3.98356 4.27192 4.36449 4.48451 4.55454 4.67939 4.70944 4.88241 4.98135 5.11491 5.18338 5.44562 5.56634 5.67303 5.72374 5.82394 6.03928 6.14336 6.26070 6.37881 6.62455 6.76449 6.93252 8.14844 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.006152 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.162025 B = 4550.068676 C = 5162.478371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.030 3.970 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.456 4.456 8 H 0.092 0.908 9 C 0.094 3.906 10 C -0.259 4.259 11 C -0.064 4.064 12 C -0.283 4.283 13 C -0.021 4.021 14 C -0.131 4.131 15 C -0.097 4.097 16 C 0.025 3.975 17 Cl -0.202 7.202 18 C -0.161 4.161 19 C -0.085 4.085 20 C -0.141 4.141 21 H 0.295 0.705 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 -6.640 1.665 9.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.188 4.188 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.482 4.482 8 H 0.110 0.890 9 C 0.091 3.909 10 C -0.279 4.279 11 C -0.083 4.083 12 C -0.303 4.303 13 C -0.021 4.021 14 C -0.149 4.149 15 C -0.098 4.098 16 C -0.037 4.037 17 Cl -0.176 7.176 18 C -0.180 4.180 19 C -0.103 4.103 20 C -0.141 4.141 21 H 0.106 0.894 22 H 0.120 0.880 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.149 0.851 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.156 0.844 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.694 -6.521 1.807 8.843 hybrid contribution -0.318 0.940 -0.079 0.995 sum 5.376 -5.581 1.728 7.939 Atomic orbital electron populations 1.69853 1.09433 1.31449 1.31454 1.27020 0.95583 1.05062 0.91146 0.85116 0.78764 0.74678 0.80494 1.18096 1.19006 1.17771 1.19897 0.97896 0.91601 1.38846 0.89037 1.19012 0.92118 0.91361 0.88393 1.21050 1.02489 0.96956 1.07390 1.20786 0.97493 0.92979 0.97009 1.20568 1.01654 0.96952 1.11090 1.18080 0.94931 0.92794 0.96324 1.20914 0.97321 0.96379 1.00298 1.19464 0.96449 0.94984 0.98884 1.23308 1.00366 0.95162 0.84838 1.98721 1.85816 1.95500 1.37526 1.20918 1.02033 0.91288 1.03720 1.21181 0.94857 0.98089 0.96136 1.19565 0.98624 0.93493 1.02447 0.89392 0.87963 0.87726 0.86885 0.85074 0.86402 0.85990 0.84424 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.23 10.86 21.86 0.24 -39.99 15 2 C 0.03 1.46 5.20 85.32 0.44 1.90 15 3 Si 0.99 35.59 29.59 68.60 2.03 37.62 15 4 H -0.26 -9.02 7.11 99.48 0.71 -8.32 15 5 H -0.27 -9.06 7.11 99.48 0.71 -8.36 15 6 H -0.25 -8.74 7.11 99.48 0.71 -8.03 15 7 C -0.46 -23.32 8.51 23.27 0.20 -23.13 15 8 H 0.09 4.37 6.71 -2.91 -0.02 4.35 15 9 C 0.09 5.06 5.73 -19.92 -0.11 4.95 15 10 C -0.26 -13.88 8.69 22.81 0.20 -13.68 15 11 C -0.06 -3.11 9.92 22.12 0.22 -2.89 15 12 C -0.28 -12.99 9.77 22.72 0.22 -12.77 15 13 C -0.02 -0.98 5.74 -21.33 -0.12 -1.10 15 14 C -0.13 -4.89 9.37 22.38 0.21 -4.68 15 15 C -0.10 -3.18 5.22 -20.11 -0.10 -3.29 15 16 C 0.03 0.58 6.75 71.24 0.48 1.06 15 17 Cl -0.20 -5.38 29.13 -2.72 -0.08 -5.46 15 18 C -0.16 -5.64 9.65 22.34 0.22 -5.43 15 19 C -0.08 -3.60 9.46 22.45 0.21 -3.39 15 20 C -0.14 -6.94 5.90 -19.89 -0.12 -7.06 15 21 H 0.29 13.29 8.29 -92.71 -0.77 12.52 15 22 H 0.10 5.67 6.12 -2.91 -0.02 5.65 15 23 H 0.10 4.47 8.06 -2.91 -0.02 4.44 15 24 H 0.11 4.51 8.06 -2.91 -0.02 4.49 15 25 H 0.13 4.21 8.06 -2.91 -0.02 4.18 15 26 H 0.12 2.22 8.07 -2.38 -0.02 2.20 15 27 H 0.12 2.20 8.08 -2.39 -0.02 2.18 15 28 H 0.14 3.88 8.06 -2.91 -0.02 3.86 15 29 H 0.12 4.90 6.65 -2.91 -0.02 4.88 15 Total: -1.00 -58.59 266.96 5.29 -53.30 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.16 Total: 24.04 kcal Atomic # 6 Polarization: -71.45 SS G_CDS: 1.94 Total: -69.51 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.24 Total: -39.99 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Atomic # 17 Polarization: -5.38 SS G_CDS: -0.08 Total: -5.46 kcal Total: -58.59 5.29 -53.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238530820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.487 kcal (2) G-P(sol) polarization free energy of solvation -58.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds