Wall clock time and date at job start Mon Mar 30 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99986 * 2 1 4 4 H 1.48501 * 109.46871 * 275.41134 * 3 2 1 5 5 H 1.48497 * 109.46846 * 35.41080 * 3 2 1 6 6 H 1.48499 * 109.47052 * 155.40920 * 3 2 1 7 7 C 1.39962 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99843 * 341.67555 * 7 2 1 9 9 C 1.41158 * 120.00427 * 161.67445 * 7 2 1 10 10 C 1.41546 * 119.87915 * 150.04640 * 9 7 2 11 11 C 1.35292 * 120.75645 * 180.28127 * 10 9 7 12 12 C 1.41101 * 120.21162 * 359.45950 * 11 10 9 13 13 C 1.40200 * 120.90268 * 180.24832 * 12 11 10 14 14 C 1.36388 * 119.78667 * 180.26184 * 13 12 11 15 15 C 1.50700 * 119.48278 * 179.97438 * 14 13 12 16 16 Cl 1.80293 * 109.47476 * 90.00177 * 15 14 13 17 17 C 1.39292 * 121.03292 * 0.02562 * 14 13 12 18 18 C 1.36154 * 120.91655 * 359.97438 * 17 14 13 19 19 C 1.40841 * 119.63520 * 0.02562 * 18 17 14 20 20 C 1.39959 * 121.02844 * 179.97438 * 19 18 17 21 21 H 0.96991 * 119.99842 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.61797 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.89281 * 179.72945 * 11 10 9 24 24 H 1.07997 * 120.10515 * 0.28572 * 13 12 11 25 25 H 1.09005 * 109.47235 * 210.00430 * 15 14 13 26 26 H 1.09002 * 109.46781 * 329.99698 * 15 14 13 27 27 H 1.07998 * 119.54095 * 180.02562 * 17 14 13 28 28 H 1.07996 * 120.18017 * 180.02562 * 18 17 14 29 29 H 1.07993 * 120.32931 * 0.04890 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1124 -1.3939 5 1 1.5015 2.6169 0.8112 6 1 3.5922 1.4099 0.5826 7 6 2.0081 -1.2121 0.0005 8 1 1.5091 -2.1236 0.2950 9 6 3.3659 -1.2433 -0.3838 10 6 4.2344 -2.2121 0.1736 11 6 5.5402 -2.2545 -0.1779 12 6 6.0527 -1.3356 -1.1180 13 6 7.4022 -1.3698 -1.4965 14 6 7.8747 -0.4673 -2.4033 15 6 9.3266 -0.5099 -2.8048 16 17 9.5247 -1.5974 -4.2291 17 6 7.0364 0.4940 -2.9634 18 6 5.7202 0.5592 -2.6212 19 6 5.1970 -0.3566 -1.6878 20 6 3.8487 -0.3156 -1.3147 21 1 -0.4849 0.8400 -0.0004 22 1 3.8512 -2.9230 0.8907 23 1 6.1914 -2.9969 0.2594 24 1 8.0654 -2.1088 -1.0717 25 1 9.6612 0.4944 -3.0651 26 1 9.9224 -0.8873 -1.9737 27 1 7.4359 1.1967 -3.6795 28 1 5.0809 1.3091 -3.0631 29 1 3.1871 0.4236 -1.7413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238530972.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:10 Heat of formation + Delta-G solvation = -5.326409 kcal Electronic energy + Delta-G solvation = -14661.133627 eV Core-core repulsion = 12151.973013 eV Total energy + Delta-G solvation = -2509.160614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87181 -37.94751 -36.63205 -35.37240 -33.52842 -32.50688 -30.20470 -28.75885 -25.68114 -24.03901 -22.86638 -22.25685 -19.50566 -17.89868 -17.74875 -16.69415 -16.30156 -15.56207 -15.28242 -15.12570 -14.75520 -14.38519 -14.15473 -14.11542 -13.64656 -13.54256 -12.95547 -12.74144 -12.61625 -12.03196 -11.84692 -11.77261 -11.38665 -11.22327 -11.19933 -11.02787 -10.48802 -9.31543 -9.01528 -8.64935 -6.54142 -0.13221 0.30853 1.15680 1.26953 1.31260 1.47005 1.65629 2.08104 2.21689 2.90075 3.59604 3.78310 3.89351 4.14243 4.24551 4.41461 4.50254 4.59079 4.60339 4.77893 4.83373 4.92624 5.04952 5.25505 5.40502 5.50503 5.61710 5.72323 5.81546 5.90920 6.10486 6.25920 6.32565 6.63097 6.74634 8.05398 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.041264 B = 0.006016 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.394306 B = 4652.930998 C = 5051.768090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.051 3.949 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.067 0.933 9 C 0.077 3.923 10 C -0.170 4.170 11 C -0.080 4.080 12 C -0.149 4.149 13 C -0.051 4.051 14 C -0.167 4.167 15 C 0.031 3.969 16 Cl -0.209 7.209 17 C -0.080 4.080 18 C -0.169 4.169 19 C -0.003 4.003 20 C -0.300 4.300 21 H 0.297 0.703 22 H 0.118 0.882 23 H 0.147 0.853 24 H 0.144 0.856 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.139 0.861 28 H 0.115 0.885 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.026 1.727 -2.909 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.496 4.496 8 H 0.085 0.915 9 C 0.075 3.925 10 C -0.189 4.189 11 C -0.098 4.098 12 C -0.150 4.150 13 C -0.069 4.069 14 C -0.167 4.167 15 C -0.031 4.031 16 Cl -0.183 7.183 17 C -0.098 4.098 18 C -0.188 4.188 19 C -0.003 4.003 20 C -0.320 4.320 21 H 0.107 0.893 22 H 0.136 0.864 23 H 0.165 0.835 24 H 0.162 0.838 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.157 0.843 28 H 0.133 0.867 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.743 1.720 -2.987 16.116 hybrid contribution -0.834 0.502 -0.006 0.974 sum 14.909 2.222 -2.993 15.368 Atomic orbital electron populations 1.69702 1.09063 1.31802 1.35510 1.26822 0.95304 1.04166 0.90239 0.85407 0.79478 0.76745 0.79195 1.19071 1.20282 1.18035 1.19618 0.94508 0.95865 1.39628 0.91478 1.17896 0.92784 0.91958 0.89891 1.21192 0.94153 1.01265 1.02244 1.21066 0.95267 0.97588 0.95898 1.18098 0.94641 0.99521 1.02704 1.21015 0.93339 0.97013 0.95506 1.19379 0.96024 0.99543 1.01781 1.23225 0.93561 0.96982 0.89332 1.98726 1.97906 1.71115 1.50562 1.20774 0.92628 0.97990 0.98452 1.21062 0.96693 1.00394 1.00611 1.18166 0.93047 0.94349 0.94773 1.20946 0.95538 1.07912 1.07636 0.89253 0.86418 0.83548 0.83838 0.86504 0.86405 0.84309 0.86697 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.07 13.93 21.83 0.30 -44.77 15 2 C 0.05 2.73 5.39 85.26 0.46 3.18 15 3 Si 0.97 43.69 24.52 68.60 1.68 45.37 15 4 H -0.26 -11.62 6.71 99.48 0.67 -10.95 15 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 6 H -0.26 -11.98 6.87 99.48 0.68 -11.30 15 7 C -0.47 -25.72 9.54 23.41 0.22 -25.49 15 8 H 0.07 3.88 8.06 -2.91 -0.02 3.86 15 9 C 0.08 3.92 5.11 -21.32 -0.11 3.81 15 10 C -0.17 -7.41 9.66 22.41 0.22 -7.19 15 11 C -0.08 -3.00 9.71 22.29 0.22 -2.78 15 12 C -0.15 -5.74 5.75 -21.18 -0.12 -5.87 15 13 C -0.05 -1.52 9.35 22.31 0.21 -1.31 15 14 C -0.17 -4.53 5.23 -20.04 -0.10 -4.63 15 15 C 0.03 0.58 6.75 71.24 0.48 1.06 15 16 Cl -0.21 -4.82 29.13 -2.72 -0.08 -4.90 15 17 C -0.08 -2.40 9.59 22.04 0.21 -2.19 15 18 C -0.17 -6.30 9.77 22.42 0.22 -6.08 15 19 C 0.00 -0.14 5.74 -21.30 -0.12 -0.26 15 20 C -0.30 -14.73 6.91 23.12 0.16 -14.57 15 21 H 0.30 14.35 8.30 -92.71 -0.77 13.58 15 22 H 0.12 4.72 8.06 -2.91 -0.02 4.70 15 23 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 24 H 0.14 3.37 8.06 -2.91 -0.02 3.35 15 25 H 0.12 1.71 8.08 -2.38 -0.02 1.69 15 26 H 0.12 1.71 8.07 -2.39 -0.02 1.69 15 27 H 0.14 3.24 8.06 -2.91 -0.02 3.21 15 28 H 0.11 4.08 8.06 -2.91 -0.02 4.06 15 29 H 0.09 4.63 4.73 -2.91 -0.01 4.61 15 Total: -1.00 -59.74 264.28 4.94 -54.80 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.10 Total: 11.82 kcal Atomic # 6 Polarization: -64.26 SS G_CDS: 1.94 Total: -62.32 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.30 Total: -44.77 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.68 Total: 45.37 kcal Atomic # 17 Polarization: -4.82 SS G_CDS: -0.08 Total: -4.90 kcal Total: -59.74 4.94 -54.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238530972.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.475 kcal (2) G-P(sol) polarization free energy of solvation -59.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds