Wall clock time and date at job start Mon Mar 30 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48496 * 109.46976 * 239.99565 * 3 2 1 5 5 H 1.48500 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46999 * 119.99771 * 3 2 1 7 7 C 1.39966 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00315 * 198.05042 * 7 2 1 9 9 C 1.41164 * 119.99961 * 18.05576 * 7 2 1 10 10 C 1.41535 * 119.87535 * 204.97915 * 9 7 2 11 11 C 1.35302 * 120.75353 * 180.23239 * 10 9 7 12 12 C 1.41099 * 120.21273 * 359.49795 * 11 10 9 13 13 C 1.40199 * 120.90670 * 180.23003 * 12 11 10 14 14 C 1.36396 * 119.78839 * 180.26905 * 13 12 11 15 15 C 1.39287 * 121.03118 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.54148 * 180.02562 * 15 14 13 17 17 Cl 1.80299 * 109.46966 * 269.97964 * 16 15 14 18 18 C 1.36158 * 120.91553 * 0.02562 * 15 14 13 19 19 C 1.40846 * 119.63802 * 359.97438 * 18 15 14 20 20 C 1.39951 * 121.02613 * 179.97438 * 19 18 15 21 21 H 0.96996 * 119.99851 * 0.02562 * 1 2 3 22 22 H 1.07994 * 119.62471 * 359.94915 * 10 9 7 23 23 H 1.08000 * 119.89103 * 179.72017 * 11 10 9 24 24 H 1.07999 * 120.10756 * 0.29444 * 13 12 11 25 25 H 1.08003 * 119.48318 * 179.97438 * 14 13 12 26 26 H 1.08999 * 109.47088 * 29.98201 * 16 15 14 27 27 H 1.08998 * 109.47084 * 149.98201 * 16 15 14 28 28 H 1.08000 * 120.17873 * 179.97438 * 18 15 14 29 29 H 1.08000 * 120.32940 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2124 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6965 1.2126 7 6 2.0081 -1.2121 0.0005 8 1 3.0482 -1.2350 0.2904 9 6 1.3544 -2.4047 -0.3778 10 6 1.8286 -3.6503 0.0986 11 6 1.2185 -4.8045 -0.2565 12 6 0.0895 -4.7798 -1.1024 13 6 -0.5567 -5.9667 -1.4757 14 6 -1.6430 -5.9167 -2.2990 15 6 -2.1255 -4.7011 -2.7782 16 6 -3.3286 -4.6849 -3.6856 17 17 -2.7889 -4.8070 -5.4016 18 6 -1.5251 -3.5273 -2.4382 19 6 -0.4009 -3.5400 -1.5899 20 6 0.2390 -2.3509 -1.2223 21 1 -0.4850 0.8400 -0.0004 22 1 2.6899 -3.6800 0.7494 23 1 1.5948 -5.7476 0.1116 24 1 -0.1958 -6.9175 -1.1122 25 1 -2.1369 -6.8340 -2.5838 26 1 -3.9751 -5.5294 -3.4470 27 1 -3.8787 -3.7547 -3.5431 28 1 -1.9089 -2.5915 -2.8170 29 1 -0.1239 -1.4012 -1.5867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238531171.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:56 Heat of formation + Delta-G solvation = 7.022472 kcal Electronic energy + Delta-G solvation = -14600.272912 eV Core-core repulsion = 12091.647786 eV Total energy + Delta-G solvation = -2508.625127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.06843 -36.29855 -35.36841 -33.63001 -31.50092 -30.50186 -28.79646 -25.80521 -25.38501 -21.87070 -20.83359 -20.68016 -17.68144 -16.12026 -15.72761 -14.99707 -14.78249 -14.09070 -13.71673 -13.51540 -13.11074 -12.53199 -12.29261 -12.25455 -12.17169 -11.61185 -11.23032 -11.10056 -10.89907 -10.52371 -10.25650 -10.12311 -10.02297 -9.68635 -9.56915 -9.20261 -8.74358 -7.50078 -6.91871 -6.82179 -4.44694 1.56759 2.02467 2.78579 2.96219 2.99697 3.03113 3.36818 3.81507 4.00277 4.73813 5.10471 5.14469 5.53173 5.62777 5.66909 5.84298 6.05248 6.21441 6.28683 6.58800 6.67649 6.81904 6.96163 6.99468 7.19485 7.28545 7.40637 7.50183 7.68201 7.86982 8.01717 8.09228 8.47256 8.69698 8.76922 10.02175 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.006217 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.593206 B = 4502.860381 C = 5282.075905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.080 0.920 9 C 0.101 3.899 10 C -0.153 4.153 11 C -0.108 4.108 12 C -0.129 4.129 13 C -0.079 4.079 14 C -0.173 4.173 15 C -0.113 4.113 16 C 0.022 3.978 17 Cl -0.197 7.197 18 C -0.103 4.103 19 C -0.008 4.008 20 C -0.201 4.201 21 H 0.284 0.716 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 -4.463 -3.103 6.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.172 4.172 11 C -0.127 4.127 12 C -0.130 4.130 13 C -0.097 4.097 14 C -0.192 4.192 15 C -0.113 4.113 16 C -0.040 4.040 17 Cl -0.171 7.171 18 C -0.122 4.122 19 C -0.008 4.008 20 C -0.221 4.221 21 H 0.095 0.905 22 H 0.118 0.882 23 H 0.118 0.882 24 H 0.124 0.876 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.726 -4.299 -3.204 6.529 hybrid contribution 0.329 0.750 0.046 0.821 sum -3.397 -3.548 -3.159 5.840 Atomic orbital electron populations 1.69814 1.07681 1.29702 1.33030 1.25950 0.94778 1.01510 0.92323 0.86330 0.80198 0.79954 0.80129 1.18635 1.20163 1.18882 1.19628 0.98210 0.91357 1.38644 0.90149 1.17580 0.91836 0.91672 0.89054 1.21056 1.01201 0.93137 1.01756 1.20557 0.96099 0.97139 0.98868 1.17758 0.98825 0.92619 1.03827 1.20724 0.95273 0.96601 0.97088 1.20103 0.99931 0.95810 1.03356 1.19050 0.97892 0.94370 1.00017 1.23162 0.96234 1.04421 0.80209 1.98707 1.92639 1.99030 1.26722 1.20822 0.96072 0.96411 0.98914 1.17948 0.94104 0.93404 0.95358 1.21265 1.01408 0.95607 1.03802 0.90483 0.88229 0.88249 0.87605 0.88027 0.88973 0.88857 0.87141 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.36 10.97 55.55 0.61 -18.75 15 2 C 0.07 1.78 5.12 -17.34 -0.09 1.69 15 3 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 15 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 7 C -0.45 -11.35 9.02 -37.82 -0.34 -11.69 15 8 H 0.08 1.91 7.91 -52.48 -0.42 1.50 15 9 C 0.10 2.58 5.57 -106.87 -0.60 1.99 15 10 C -0.15 -3.51 9.66 -39.37 -0.38 -3.89 15 11 C -0.11 -2.32 9.71 -39.54 -0.38 -2.70 15 12 C -0.13 -2.87 5.75 -106.65 -0.61 -3.48 15 13 C -0.08 -1.51 9.75 -39.51 -0.39 -1.89 15 14 C -0.17 -3.10 9.59 -39.86 -0.38 -3.48 15 15 C -0.11 -2.04 5.22 -104.98 -0.55 -2.59 15 16 C 0.02 0.31 6.75 36.01 0.24 0.56 15 17 Cl -0.20 -2.99 29.13 -51.86 -1.51 -4.50 15 18 C -0.10 -2.14 9.38 -39.34 -0.37 -2.51 15 19 C -0.01 -0.18 5.74 -106.85 -0.61 -0.80 15 20 C -0.20 -5.12 8.44 -38.28 -0.32 -5.44 15 21 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 22 H 0.10 2.07 8.06 -52.49 -0.42 1.65 15 23 H 0.10 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.11 1.73 8.06 -52.49 -0.42 1.31 15 25 H 0.10 1.55 8.06 -52.48 -0.42 1.13 15 26 H 0.09 1.11 8.08 -51.93 -0.42 0.69 15 27 H 0.09 1.20 8.07 -51.93 -0.42 0.78 15 28 H 0.11 2.17 8.06 -52.49 -0.42 1.75 15 29 H 0.12 3.23 6.16 -52.49 -0.32 2.91 15 LS Contribution 269.53 15.07 4.06 4.06 Total: -1.00 -26.28 269.53 -9.48 -35.75 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -2.83 Total: 4.85 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: -4.78 Total: -34.23 kcal Atomic # 7 Polarization: -19.36 SS G_CDS: 0.61 Total: -18.75 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -1.51 Total: -4.50 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.28 -9.48 -35.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238531171.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.777 kcal (2) G-P(sol) polarization free energy of solvation -26.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds