Wall clock time and date at job start Mon Mar 30 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86796 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47192 * 240.00224 * 3 2 1 5 5 H 1.48502 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47274 * 120.00198 * 3 2 1 7 7 C 1.40158 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99587 * 195.22012 * 7 2 1 9 9 C 1.40449 * 119.99680 * 15.22013 * 7 2 1 10 10 C 1.40522 * 120.72033 * 25.16908 * 9 7 2 11 11 C 1.38163 * 120.42239 * 180.02562 * 10 9 7 12 12 C 1.37670 * 121.79571 * 359.93137 * 11 10 9 13 13 C 1.40645 * 120.79410 * 0.04545 * 12 11 10 14 14 C 1.40516 * 121.16399 * 179.97438 * 13 12 11 15 15 C 1.36340 * 119.76569 * 180.02562 * 14 13 12 16 16 C 1.39083 * 120.93238 * 359.97010 * 15 14 13 17 17 C 1.50703 * 119.64071 * 180.02562 * 16 15 14 18 18 Cl 1.80301 * 109.47182 * 269.97828 * 17 16 15 19 19 C 1.37677 * 120.71534 * 0.02562 * 16 15 14 20 20 C 1.39534 * 119.55945 * 0.02562 * 19 16 15 21 21 H 0.96997 * 119.99963 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.79083 * 0.04011 * 10 9 7 23 23 H 1.07997 * 119.09965 * 179.97438 * 11 10 9 24 24 H 1.08003 * 119.59751 * 180.31847 * 12 11 10 25 25 H 1.07994 * 120.11747 * 0.02562 * 14 13 12 26 26 H 1.07996 * 119.53112 * 180.02562 * 15 14 13 27 27 H 1.09002 * 109.47225 * 29.97537 * 17 16 15 28 28 H 1.08995 * 109.47048 * 149.97414 * 17 16 15 29 29 H 1.07995 * 120.22494 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0082 -1.2138 -0.0005 8 1 3.0597 -1.2302 0.2450 9 6 1.3428 -2.4086 -0.3204 10 6 0.1893 -2.3953 -1.1229 11 6 -0.4607 -3.5743 -1.4333 12 6 -0.0106 -4.7926 -0.9769 13 6 1.1380 -4.8796 -0.1698 14 6 1.6039 -6.1189 0.3007 15 6 2.7202 -6.1701 1.0819 16 6 3.4087 -5.0104 1.4217 17 6 4.6397 -5.1008 2.2865 18 17 4.1663 -4.9709 4.0214 19 6 2.9780 -3.7808 0.9767 20 6 1.8377 -3.6991 0.1766 21 1 -0.4850 0.8400 0.0004 22 1 -0.1915 -1.4574 -1.4996 23 1 -1.3456 -3.5392 -2.0513 24 1 -0.5433 -5.6929 -1.2456 25 1 1.0797 -7.0277 0.0445 26 1 3.0752 -7.1246 1.4411 27 1 5.1345 -6.0569 2.1155 28 1 5.3214 -4.2887 2.0341 29 1 3.5189 -2.8855 1.2450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238531371.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:15 Heat of formation + Delta-G solvation = 5.602581 kcal Electronic energy + Delta-G solvation = -14756.547351 eV Core-core repulsion = 12247.860653 eV Total energy + Delta-G solvation = -2508.686698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.88534 -36.01465 -35.17857 -33.86376 -31.47437 -30.33251 -28.45303 -26.39029 -24.81195 -22.06133 -20.88436 -20.49026 -17.48082 -16.04380 -15.87524 -15.03746 -14.88374 -13.96356 -13.59881 -13.48789 -13.05369 -12.60722 -12.21578 -12.14954 -11.99753 -11.61185 -11.41010 -11.01376 -10.84416 -10.68947 -10.15738 -10.02002 -9.90322 -9.58477 -9.47822 -9.42736 -8.55152 -7.42138 -7.12508 -6.85933 -4.52262 1.66582 2.10974 2.78820 2.90070 2.92317 2.94990 3.35645 3.67675 4.15929 4.60881 5.23400 5.27260 5.56025 5.66816 5.76207 5.85043 6.21347 6.30116 6.39943 6.54759 6.67733 6.79393 6.94602 7.02462 7.28123 7.36615 7.36760 7.56622 7.80147 7.87611 8.04819 8.08595 8.40000 8.53734 8.71794 9.79746 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.008429 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.615422 B = 3321.120401 C = 4569.767929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.087 0.913 9 C 0.127 3.873 10 C -0.228 4.228 11 C -0.048 4.048 12 C -0.284 4.284 13 C 0.017 3.983 14 C -0.158 4.158 15 C -0.090 4.090 16 C -0.194 4.194 17 C 0.033 3.967 18 Cl -0.207 7.207 19 C -0.031 4.031 20 C -0.125 4.125 21 H 0.289 0.711 22 H 0.119 0.881 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 -3.124 1.134 6.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.447 4.447 8 H 0.105 0.895 9 C 0.124 3.876 10 C -0.248 4.248 11 C -0.067 4.067 12 C -0.304 4.304 13 C 0.017 3.983 14 C -0.177 4.177 15 C -0.108 4.108 16 C -0.195 4.195 17 C -0.029 4.029 18 Cl -0.180 7.180 19 C -0.050 4.050 20 C -0.126 4.126 21 H 0.100 0.900 22 H 0.137 0.863 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.003 -2.936 1.286 5.942 hybrid contribution 0.113 0.670 0.112 0.689 sum 5.117 -2.266 1.398 5.768 Atomic orbital electron populations 1.69788 1.07923 1.30327 1.30076 1.26132 0.94919 1.01994 0.92210 0.86195 0.80185 0.79147 0.80475 1.18326 1.19864 1.18451 1.19660 0.97543 0.90853 1.36636 0.89500 1.18613 0.91434 0.89941 0.87655 1.21066 1.01111 0.96848 1.05736 1.20580 0.96724 0.93102 0.96248 1.20250 1.01837 0.96456 1.11840 1.17789 0.94017 0.91856 0.94679 1.20715 0.98243 0.96606 1.02114 1.20282 0.95788 0.96410 0.98327 1.19168 1.00245 0.94201 1.05858 1.23009 0.96343 1.03825 0.79749 1.98707 1.94236 1.98984 1.26120 1.20925 0.94337 0.95740 0.93982 1.19137 0.97560 0.93575 1.02308 0.89966 0.86280 0.89545 0.89170 0.87509 0.87984 0.89368 0.89167 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.19 10.86 55.56 0.60 -17.58 15 2 C 0.07 1.61 5.20 -17.30 -0.09 1.52 15 3 Si 0.92 17.03 29.59 -169.99 -5.03 12.00 15 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 7 C -0.42 -10.25 8.51 -38.03 -0.32 -10.57 15 8 H 0.09 1.98 6.71 -52.49 -0.35 1.63 15 9 C 0.13 3.24 5.73 -104.71 -0.60 2.64 15 10 C -0.23 -5.75 8.69 -38.75 -0.34 -6.09 15 11 C -0.05 -1.12 9.92 -39.82 -0.39 -1.51 15 12 C -0.28 -6.51 9.77 -38.88 -0.38 -6.89 15 13 C 0.02 0.39 5.74 -106.88 -0.61 -0.23 15 14 C -0.16 -3.20 9.77 -39.41 -0.38 -3.58 15 15 C -0.09 -1.66 9.59 -39.95 -0.38 -2.04 15 16 C -0.19 -3.61 5.26 -104.51 -0.55 -4.16 15 17 C 0.03 0.49 6.76 36.01 0.24 0.73 15 18 Cl -0.21 -3.33 29.13 -51.86 -1.51 -4.84 15 19 C -0.03 -0.67 9.08 -39.30 -0.36 -1.02 15 20 C -0.13 -3.02 5.90 -104.66 -0.62 -3.64 15 21 H 0.29 6.22 8.29 -40.82 -0.34 5.88 15 22 H 0.12 3.05 6.11 -52.48 -0.32 2.73 15 23 H 0.09 1.79 8.06 -52.49 -0.42 1.36 15 24 H 0.09 1.86 8.06 -52.48 -0.42 1.43 15 25 H 0.11 1.90 8.06 -52.49 -0.42 1.48 15 26 H 0.10 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.09 1.10 8.08 -51.93 -0.42 0.68 15 28 H 0.09 1.21 8.08 -51.93 -0.42 0.79 15 29 H 0.12 2.38 6.65 -52.49 -0.35 2.03 15 LS Contribution 266.98 15.07 4.02 4.02 Total: -1.00 -25.98 266.98 -9.39 -35.37 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -2.69 Total: 5.89 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -4.79 Total: -34.85 kcal Atomic # 7 Polarization: -18.19 SS G_CDS: 0.60 Total: -17.58 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -1.51 Total: -4.84 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -25.98 -9.39 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238531371.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.968 kcal (2) G-P(sol) polarization free energy of solvation -25.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds