Wall clock time and date at job start Mon Mar 30 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86796 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47192 * 240.00224 * 3 2 1 5 5 H 1.48502 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47274 * 120.00198 * 3 2 1 7 7 C 1.40158 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99587 * 195.22012 * 7 2 1 9 9 C 1.40449 * 119.99680 * 15.22013 * 7 2 1 10 10 C 1.40522 * 120.72033 * 25.16908 * 9 7 2 11 11 C 1.38163 * 120.42239 * 180.02562 * 10 9 7 12 12 C 1.37670 * 121.79571 * 359.93137 * 11 10 9 13 13 C 1.40645 * 120.79410 * 0.04545 * 12 11 10 14 14 C 1.40516 * 121.16399 * 179.97438 * 13 12 11 15 15 C 1.36340 * 119.76569 * 180.02562 * 14 13 12 16 16 C 1.39083 * 120.93238 * 359.97010 * 15 14 13 17 17 C 1.50703 * 119.64071 * 180.02562 * 16 15 14 18 18 Cl 1.80301 * 109.47182 * 269.97828 * 17 16 15 19 19 C 1.37677 * 120.71534 * 0.02562 * 16 15 14 20 20 C 1.39534 * 119.55945 * 0.02562 * 19 16 15 21 21 H 0.96997 * 119.99963 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.79083 * 0.04011 * 10 9 7 23 23 H 1.07997 * 119.09965 * 179.97438 * 11 10 9 24 24 H 1.08003 * 119.59751 * 180.31847 * 12 11 10 25 25 H 1.07994 * 120.11747 * 0.02562 * 14 13 12 26 26 H 1.07996 * 119.53112 * 180.02562 * 15 14 13 27 27 H 1.09002 * 109.47225 * 29.97537 * 17 16 15 28 28 H 1.08995 * 109.47048 * 149.97414 * 17 16 15 29 29 H 1.07995 * 120.22494 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0082 -1.2138 -0.0005 8 1 3.0597 -1.2302 0.2450 9 6 1.3428 -2.4086 -0.3204 10 6 0.1893 -2.3953 -1.1229 11 6 -0.4607 -3.5743 -1.4333 12 6 -0.0106 -4.7926 -0.9769 13 6 1.1380 -4.8796 -0.1698 14 6 1.6039 -6.1189 0.3007 15 6 2.7202 -6.1701 1.0819 16 6 3.4087 -5.0104 1.4217 17 6 4.6397 -5.1008 2.2865 18 17 4.1663 -4.9709 4.0214 19 6 2.9780 -3.7808 0.9767 20 6 1.8377 -3.6991 0.1766 21 1 -0.4850 0.8400 0.0004 22 1 -0.1915 -1.4574 -1.4996 23 1 -1.3456 -3.5392 -2.0513 24 1 -0.5433 -5.6929 -1.2456 25 1 1.0797 -7.0277 0.0445 26 1 3.0752 -7.1246 1.4411 27 1 5.1345 -6.0569 2.1155 28 1 5.3214 -4.2887 2.0341 29 1 3.5189 -2.8855 1.2450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238531371.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:15 Heat of formation + Delta-G solvation = -5.267679 kcal Electronic energy + Delta-G solvation = -14757.018721 eV Core-core repulsion = 12247.860653 eV Total energy + Delta-G solvation = -2509.158068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54259 -37.56950 -36.59236 -35.55266 -33.14087 -31.93541 -30.13444 -27.98438 -26.46912 -23.71799 -22.50822 -22.20442 -19.21799 -17.71797 -17.55362 -16.61444 -16.45839 -15.27250 -15.14766 -15.04951 -14.53025 -14.23956 -13.86939 -13.74362 -13.57452 -13.22625 -12.96434 -12.68206 -12.46406 -12.16414 -11.68198 -11.49602 -11.33273 -11.16438 -11.14345 -11.09482 -10.25326 -9.13622 -8.83793 -8.57980 -6.34357 0.02286 0.49211 1.24053 1.36725 1.49341 1.53137 1.75552 2.12820 2.47843 2.92423 3.77471 3.87787 3.99116 4.24528 4.32382 4.49177 4.57234 4.68483 4.75557 4.91914 4.96699 5.12592 5.20261 5.36728 5.57628 5.65278 5.76819 5.86365 6.02785 6.13367 6.25439 6.38554 6.61761 6.74831 6.92435 8.12936 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.008429 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.615422 B = 3321.120401 C = 4569.767929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.452 4.452 8 H 0.092 0.908 9 C 0.097 3.903 10 C -0.260 4.260 11 C -0.061 4.061 12 C -0.289 4.289 13 C -0.012 4.012 14 C -0.160 4.160 15 C -0.087 4.087 16 C -0.173 4.173 17 C 0.033 3.967 18 Cl -0.211 7.211 19 C -0.055 4.055 20 C -0.151 4.151 21 H 0.296 0.704 22 H 0.103 0.897 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.143 0.857 27 H 0.124 0.876 28 H 0.106 0.894 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -4.527 2.068 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.478 4.478 8 H 0.110 0.890 9 C 0.094 3.906 10 C -0.280 4.280 11 C -0.080 4.080 12 C -0.308 4.308 13 C -0.012 4.012 14 C -0.178 4.178 15 C -0.105 4.105 16 C -0.174 4.174 17 C -0.028 4.028 18 Cl -0.185 7.185 19 C -0.074 4.074 20 C -0.151 4.151 21 H 0.107 0.893 22 H 0.121 0.879 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.151 0.849 26 H 0.161 0.839 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.743 -4.361 2.221 8.331 hybrid contribution -0.370 0.870 -0.103 0.951 sum 6.373 -3.491 2.118 7.569 Atomic orbital electron populations 1.69848 1.09452 1.31543 1.31041 1.27022 0.95573 1.05070 0.91108 0.85129 0.78818 0.74680 0.80536 1.17958 1.18950 1.17822 1.19912 0.97960 0.91633 1.38341 0.89018 1.19001 0.92018 0.91325 0.88221 1.21045 1.02490 0.96952 1.07520 1.20805 0.97404 0.92994 0.96777 1.20585 1.01960 0.96932 1.11336 1.18178 0.94516 0.93006 0.95547 1.21049 0.98843 0.96228 1.01672 1.20762 0.94759 0.98021 0.96960 1.19608 1.00534 0.93148 1.04069 1.23186 0.94705 1.06665 0.78270 1.98715 1.94358 1.99073 1.26355 1.21037 0.94266 0.97211 0.94838 1.19465 0.98910 0.93534 1.03211 0.89312 0.87899 0.87712 0.86913 0.84922 0.83898 0.85814 0.87539 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.86 10.86 21.86 0.24 -39.62 15 2 C 0.03 1.49 5.20 85.32 0.44 1.93 15 3 Si 0.99 35.39 29.59 68.60 2.03 37.42 15 4 H -0.26 -8.90 7.11 99.48 0.71 -8.20 15 5 H -0.27 -9.00 7.11 99.48 0.71 -8.29 15 6 H -0.25 -8.76 7.11 99.48 0.71 -8.05 15 7 C -0.45 -22.98 8.51 23.28 0.20 -22.78 15 8 H 0.09 4.35 6.71 -2.91 -0.02 4.33 15 9 C 0.10 5.21 5.73 -19.92 -0.11 5.10 15 10 C -0.26 -13.89 8.69 22.81 0.20 -13.69 15 11 C -0.06 -2.96 9.92 22.12 0.22 -2.74 15 12 C -0.29 -13.26 9.77 22.72 0.22 -13.04 15 13 C -0.01 -0.57 5.74 -21.32 -0.12 -0.69 15 14 C -0.16 -6.03 9.77 22.38 0.22 -5.81 15 15 C -0.09 -2.88 9.59 22.03 0.21 -2.66 15 16 C -0.17 -5.95 5.26 -19.79 -0.10 -6.05 15 17 C 0.03 0.86 6.76 71.24 0.48 1.34 15 18 Cl -0.21 -6.15 29.13 -2.72 -0.08 -6.23 15 19 C -0.05 -2.32 9.08 22.45 0.20 -2.12 15 20 C -0.15 -7.41 5.90 -19.89 -0.12 -7.52 15 21 H 0.30 13.24 8.29 -92.71 -0.77 12.47 15 22 H 0.10 5.67 6.11 -2.91 -0.02 5.65 15 23 H 0.10 4.46 8.06 -2.91 -0.02 4.43 15 24 H 0.11 4.51 8.06 -2.91 -0.02 4.49 15 25 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15 26 H 0.14 3.60 8.06 -2.91 -0.02 3.58 15 27 H 0.12 2.39 8.08 -2.39 -0.02 2.37 15 28 H 0.11 2.46 8.08 -2.39 -0.02 2.44 15 29 H 0.12 4.79 6.65 -2.91 -0.02 4.77 15 Total: -1.00 -58.25 266.98 5.29 -52.96 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 1.16 Total: 24.21 kcal Atomic # 6 Polarization: -70.67 SS G_CDS: 1.94 Total: -68.73 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.24 Total: -39.62 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Atomic # 17 Polarization: -6.15 SS G_CDS: -0.08 Total: -6.23 kcal Total: -58.25 5.29 -52.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238531371.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.688 kcal (2) G-P(sol) polarization free energy of solvation -58.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds