Wall clock time and date at job start Mon Mar 30 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36521 * 120.03983 * 2 1 4 4 C 1.38780 * 120.54142 * 180.25220 * 3 2 1 5 5 C 1.38342 * 120.58613 * 359.78481 * 4 3 2 6 6 C 1.38411 * 120.05532 * 359.96869 * 5 4 3 7 7 O 1.35641 * 120.26527 * 180.02562 * 6 5 4 8 8 C 1.42896 * 117.00239 * 359.97438 * 7 6 5 9 9 F 1.39899 * 109.47560 * 59.99141 * 8 7 6 10 10 F 1.39895 * 109.47316 * 179.97438 * 8 7 6 11 11 F 1.39906 * 109.46653 * 299.99454 * 8 7 6 12 12 C 1.40687 * 120.03400 * 179.77388 * 2 1 3 13 13 C 1.41160 * 120.28714 * 0.02562 * 12 2 1 14 14 H 1.07999 * 120.00593 * 320.95272 * 13 12 2 15 15 C 1.39947 * 119.99894 * 140.67605 * 13 12 2 16 16 N 1.30865 * 119.99654 * 340.22743 * 15 13 12 17 17 Si 1.86798 * 120.00039 * 160.23114 * 15 13 12 18 18 H 1.48503 * 109.47274 * 89.99675 * 17 15 13 19 19 H 1.48496 * 109.47312 * 210.00080 * 17 15 13 20 20 H 1.48498 * 109.46903 * 330.00113 * 17 15 13 21 21 H 1.08993 * 109.47747 * 270.22444 * 1 2 3 22 22 H 1.09007 * 109.46814 * 30.22310 * 1 2 3 23 23 H 1.09002 * 109.47366 * 150.21846 * 1 2 3 24 24 H 1.08000 * 119.73023 * 0.02562 * 3 2 1 25 25 H 1.07990 * 119.70414 * 179.75231 * 4 3 2 26 26 H 1.08002 * 119.97376 * 179.97438 * 5 4 3 27 27 H 0.97008 * 119.99538 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1818 0.0000 4 6 3.5781 1.1940 -0.0053 5 6 4.2925 0.0093 -0.0061 6 6 3.6245 -1.2030 -0.0011 7 8 4.3206 -2.3671 -0.0014 8 6 5.7463 -2.2706 -0.0076 9 9 6.1719 -1.5783 1.1312 10 9 6.3008 -3.5549 -0.0065 11 9 6.1621 -1.5837 -1.1534 12 6 2.2111 -1.2180 0.0048 13 6 1.5122 -2.4444 0.0091 14 1 0.6135 -2.5518 0.5983 15 6 1.9806 -3.5194 -0.7548 16 7 2.8045 -3.3058 -1.7488 17 14 1.4297 -5.2590 -0.3555 18 1 0.1964 -5.5755 -1.1198 19 1 2.5024 -6.2158 -0.7284 20 1 1.1523 -5.3688 1.0992 21 1 -0.3634 0.0040 1.0275 22 1 -0.3633 0.8880 -0.5173 23 1 -0.3634 -0.8919 -0.5104 24 1 1.6466 2.1150 0.0004 25 1 4.1050 2.1366 -0.0092 26 1 5.3723 0.0303 -0.0107 27 1 3.1295 -4.0510 -2.2781 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238538236.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:41 Heat of formation + Delta-G solvation = -183.137025 kcal Electronic energy + Delta-G solvation = -18538.743626 eV Core-core repulsion = 15039.306659 eV Total energy + Delta-G solvation = -3499.436966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.59603 -47.36262 -47.16669 -38.79207 -36.43154 -33.63078 -31.32018 -29.46432 -26.20406 -25.32350 -24.46338 -21.30137 -20.47466 -18.46862 -18.27570 -17.82148 -17.03473 -15.41328 -15.08327 -14.54696 -14.22355 -14.02817 -14.00755 -13.68956 -13.43558 -13.38712 -13.17266 -12.90568 -12.44838 -12.36466 -11.86989 -11.53946 -11.27478 -11.02137 -10.96255 -10.62560 -10.35798 -10.11895 -9.52833 -9.04729 -7.47434 -7.13444 -6.77535 -4.41506 2.61336 2.65342 2.72811 3.11257 3.13124 3.18429 3.87248 3.98293 4.56680 4.75739 4.88311 5.36418 5.92751 6.01662 6.14019 6.32575 6.53732 6.58479 6.70455 6.95553 7.07674 7.17533 7.52012 7.55911 7.78548 7.92582 8.16122 8.35963 8.79228 8.84232 10.21979 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.015152 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.627180 B = 1847.557036 C = 3208.150527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.108 4.108 4 C -0.202 4.202 5 C -0.167 4.167 6 C 0.036 3.964 7 O -0.263 6.263 8 C 0.587 3.413 9 F -0.184 7.184 10 F -0.152 7.152 11 F -0.177 7.177 12 C 0.122 3.878 13 C -0.469 4.469 14 H 0.085 0.915 15 C 0.086 3.914 16 N -0.774 5.774 17 Si 0.901 3.099 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.261 1.261 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 1.042 1.863 3.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.222 4.222 5 C -0.186 4.186 6 C -0.007 4.007 7 O -0.182 6.182 8 C 0.495 3.505 9 F -0.166 7.166 10 F -0.134 7.134 11 F -0.160 7.160 12 C 0.119 3.881 13 C -0.497 4.497 14 H 0.103 0.897 15 C -0.134 4.134 16 N -0.398 5.398 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.185 1.185 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.318 0.740 1.661 2.946 hybrid contribution 0.457 -0.747 -0.032 0.876 sum 2.774 -0.008 1.630 3.217 Atomic orbital electron populations 1.20424 0.92496 1.01187 1.00065 1.19391 0.94883 0.91894 1.09798 1.20246 0.93783 0.96414 1.02152 1.20121 0.93718 0.95636 1.12692 1.20965 0.98136 0.92772 1.06754 1.18965 0.91332 0.80898 1.09486 1.86593 1.10453 1.32267 1.88859 1.19822 0.83049 0.73387 0.74197 1.93212 1.90876 1.79868 1.52643 1.93186 1.84573 1.39195 1.96416 1.93225 1.91006 1.79950 1.51773 1.16713 0.86858 0.93225 0.91289 1.19229 1.10416 0.94855 1.25229 0.89741 1.25729 0.93495 1.00914 0.93228 1.69727 1.23998 1.34262 1.11848 0.86415 0.78921 0.81821 0.80259 1.19659 1.20080 1.18453 0.93561 0.93937 0.91420 0.88665 0.88482 0.88020 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.46 36.00 0.34 -1.33 15 2 C -0.16 -3.67 5.90 -104.32 -0.62 -4.29 15 3 C -0.11 -2.32 9.61 -40.00 -0.38 -2.70 15 4 C -0.20 -4.41 10.04 -39.34 -0.39 -4.81 15 5 C -0.17 -3.91 8.26 -39.48 -0.33 -4.23 15 6 C 0.04 0.91 5.97 -38.34 -0.23 0.69 15 7 O -0.26 -6.57 7.29 -18.62 -0.14 -6.71 15 8 C 0.59 12.57 3.42 101.05 0.35 12.91 15 9 F -0.18 -3.68 15.57 2.25 0.04 -3.65 15 10 F -0.15 -3.03 17.53 2.25 0.04 -2.99 15 11 F -0.18 -3.75 15.57 2.25 0.04 -3.72 15 12 C 0.12 3.15 5.36 -106.68 -0.57 2.58 15 13 C -0.47 -12.02 7.59 -37.83 -0.29 -12.31 15 14 H 0.08 2.07 7.49 -52.49 -0.39 1.67 15 15 C 0.09 2.16 4.42 -17.32 -0.08 2.08 15 16 N -0.77 -20.15 11.24 55.55 0.62 -19.52 15 17 Si 0.90 18.95 29.60 -169.99 -5.03 13.91 15 18 H -0.27 -5.54 7.11 56.52 0.40 -5.13 15 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 20 H -0.26 -5.45 7.11 56.52 0.40 -5.04 15 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.04 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.07 1.37 7.00 -51.93 -0.36 1.01 15 24 H 0.10 1.76 8.06 -52.49 -0.42 1.34 15 25 H 0.10 1.84 8.06 -52.49 -0.42 1.42 15 26 H 0.10 2.22 5.11 -52.49 -0.27 1.95 15 27 H 0.28 6.80 8.30 -40.82 -0.34 6.46 15 LS Contribution 248.40 15.07 3.74 3.74 Total: -1.00 -26.57 248.40 -4.74 -31.31 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -1.85 Total: -0.98 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.20 Total: -11.41 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.62 Total: -19.52 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.14 Total: -6.71 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 0.11 Total: -10.35 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.57 -4.74 -31.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238538236.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.826 kcal (2) G-P(sol) polarization free energy of solvation -26.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds