Wall clock time and date at job start Mon Mar 30 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38226 * 119.61842 * 125.00120 * 12 9 7 14 14 C 1.38625 * 119.16126 * 179.97438 * 13 12 9 15 15 C 1.38675 * 118.42156 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.42003 * 179.97438 * 15 14 13 17 17 F 1.39896 * 109.47069 * 89.99850 * 16 15 14 18 18 F 1.39896 * 109.46802 * 209.99928 * 16 15 14 19 19 F 1.39901 * 109.46685 * 329.99738 * 16 15 14 20 20 C 1.38183 * 119.16099 * 359.97438 * 15 14 13 21 21 N 1.31857 * 119.61836 * 304.72206 * 12 9 7 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 24 24 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 25 25 H 1.08003 * 120.41953 * 359.97438 * 13 12 9 26 26 H 1.08005 * 120.79265 * 180.02562 * 14 13 12 27 27 H 1.08003 * 119.61728 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 7 4.0007 -0.5025 1.2001 12 6 4.0137 -2.6151 -0.0001 13 6 4.8916 -3.0292 -0.9841 14 6 5.3480 -4.3381 -0.9749 15 6 4.9028 -5.1853 0.0287 16 6 5.3697 -6.6172 0.0815 17 9 6.5332 -6.7002 0.8538 18 9 4.3716 -7.4123 0.6549 19 9 5.6377 -7.0684 -1.2154 20 6 4.0256 -4.6999 0.9797 21 7 3.6149 -3.4473 0.9417 22 1 -0.4850 0.8401 -0.0004 23 1 3.6769 -0.9605 2.0388 24 1 5.0072 -0.4325 1.1920 25 1 5.2178 -2.3417 -1.7506 26 1 6.0348 -4.6896 -1.7308 27 1 3.6745 -5.3532 1.7648 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238591136.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:10 Heat of formation + Delta-G solvation = -108.916532 kcal Electronic energy + Delta-G solvation = -17469.305172 eV Core-core repulsion = 14005.379399 eV Total energy + Delta-G solvation = -3463.925773 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.19277 -47.71006 -47.66140 -40.13091 -35.20323 -32.58262 -31.95722 -30.96229 -26.97939 -25.60277 -23.82446 -22.66158 -20.53594 -18.53626 -18.49169 -18.37866 -17.00778 -16.11932 -15.74336 -14.65077 -14.62005 -14.47085 -14.31185 -14.16133 -14.10945 -13.86648 -13.82641 -13.57503 -13.07165 -13.01030 -12.37027 -11.92083 -11.64904 -10.85119 -10.48271 -10.14128 -9.80294 -9.41688 -9.18774 -8.87483 -8.57691 -7.33019 -6.02926 -4.13121 0.96081 1.35648 2.63518 3.47053 3.58674 3.69715 3.80349 3.88729 3.99712 4.42039 4.61302 4.66486 4.79887 4.97741 5.18053 5.30369 5.60759 5.76353 5.83703 5.95752 6.15337 6.70017 6.75228 7.44110 8.05503 8.21725 8.26893 8.62953 8.98762 9.58854 11.06765 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.047822 B = 0.005683 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.363095 B = 4925.417806 C = 5077.352659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.085 3.915 3 Si 0.866 3.134 4 H -0.297 1.297 5 H -0.302 1.302 6 H -0.193 1.193 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.228 3.772 10 H 0.055 0.945 11 N -0.826 5.826 12 C 0.171 3.829 13 C -0.181 4.181 14 C -0.029 4.029 15 C -0.268 4.268 16 C 0.518 3.482 17 F -0.180 7.180 18 F -0.177 7.177 19 F -0.180 7.180 20 C 0.153 3.847 21 N -0.457 5.457 22 H 0.264 0.736 23 H 0.341 0.659 24 H 0.306 0.694 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.253 -10.032 -0.523 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.224 1.224 5 H -0.230 1.230 6 H -0.115 1.115 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.118 3.882 10 H 0.073 0.927 11 N -0.354 5.354 12 C 0.032 3.968 13 C -0.202 4.202 14 C -0.055 4.055 15 C -0.272 4.272 16 C 0.463 3.537 17 F -0.161 7.161 18 F -0.158 7.158 19 F -0.161 7.161 20 C -0.006 4.006 21 N -0.165 5.165 22 H 0.073 0.927 23 H 0.155 0.845 24 H 0.117 0.883 25 H 0.161 0.839 26 H 0.157 0.843 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.112 -9.000 -0.119 15.090 hybrid contribution 1.282 -0.816 -0.583 1.628 sum 13.394 -9.816 -0.702 16.621 Atomic orbital electron populations 1.69948 1.06944 1.27405 1.48969 1.24962 0.94552 0.99992 0.92422 0.87210 0.84600 0.81134 0.77763 1.22409 1.22975 1.11481 1.20625 0.86564 0.94843 1.53256 0.90871 1.18759 0.97491 0.80825 0.91162 0.92691 1.60147 1.12476 1.56812 1.06012 1.23383 0.87106 0.99218 0.87090 1.22172 1.00445 0.96071 1.01481 1.21283 0.95948 0.93141 0.95116 1.20917 1.08748 0.93330 1.04200 1.18141 0.74977 0.87106 0.73454 1.93209 1.50331 1.96899 1.75682 1.93187 1.61255 1.76523 1.84864 1.93173 1.94002 1.90766 1.38200 1.22734 0.90007 0.92956 0.94951 1.67874 1.21543 1.02046 1.25039 0.92686 0.84529 0.88345 0.83929 0.84306 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.56 15 2 C 0.09 2.41 5.47 -17.82 -0.10 2.31 15 3 Si 0.87 20.84 26.94 -169.99 -4.58 16.26 15 4 H -0.30 -7.19 7.11 56.52 0.40 -6.79 15 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 15 6 H -0.19 -4.24 5.17 56.52 0.29 -3.95 15 7 C -0.51 -13.97 9.11 -34.44 -0.31 -14.28 15 8 H 0.07 2.24 7.93 -52.49 -0.42 1.82 15 9 C 0.23 4.90 2.43 -70.02 -0.17 4.73 15 10 H 0.06 1.15 7.30 -51.93 -0.38 0.77 15 11 N -0.83 -16.30 5.82 -6.65 -0.04 -16.33 15 12 C 0.17 3.25 5.67 -82.58 -0.47 2.78 15 13 C -0.18 -2.79 9.71 -39.44 -0.38 -3.17 15 14 C -0.03 -0.40 9.52 -39.28 -0.37 -0.77 15 15 C -0.27 -3.82 5.46 -104.48 -0.57 -4.39 15 16 C 0.52 6.65 3.38 36.01 0.12 6.77 15 17 F -0.18 -2.28 17.30 2.25 0.04 -2.24 15 18 F -0.18 -2.31 16.49 2.25 0.04 -2.27 15 19 F -0.18 -2.27 16.53 2.25 0.04 -2.23 15 20 C 0.15 2.43 10.56 -17.55 -0.19 2.25 15 21 N -0.46 -8.80 9.90 -9.47 -0.09 -8.89 15 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 23 H 0.34 6.86 8.92 -39.29 -0.35 6.51 15 24 H 0.31 5.07 9.06 -39.29 -0.36 4.72 15 25 H 0.14 1.86 7.95 -52.48 -0.42 1.44 15 26 H 0.14 1.48 7.69 -52.48 -0.40 1.08 15 27 H 0.16 2.15 7.61 -52.48 -0.40 1.75 15 LS Contribution 252.41 15.07 3.80 3.80 Total: -1.00 -30.38 252.41 -4.43 -34.81 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -1.97 Total: 7.44 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.44 Total: -3.78 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.64 Total: -51.79 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.11 Total: -6.74 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.58 Total: 16.26 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.38 -4.43 -34.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591136.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.107 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds