Wall clock time and date at job start Mon Mar 30 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47297 * 264.47493 * 3 2 1 5 5 H 1.48504 * 109.46825 * 24.47594 * 3 2 1 6 6 H 1.48496 * 109.47106 * 144.47494 * 3 2 1 7 7 C 1.37875 * 119.99813 * 179.73001 * 2 1 3 8 8 H 1.08003 * 119.99791 * 4.95357 * 7 2 1 9 9 C 1.50700 * 120.00206 * 184.96256 * 7 2 1 10 10 H 1.08998 * 109.46503 * 325.43675 * 9 7 2 11 11 N 1.46904 * 109.47097 * 85.43954 * 9 7 2 12 12 C 1.50697 * 109.47033 * 205.43921 * 9 7 2 13 13 C 1.38674 * 120.41592 * 264.99671 * 12 9 7 14 14 C 1.38634 * 118.41552 * 180.02562 * 13 12 9 15 15 C 1.38222 * 119.16530 * 0.02562 * 14 13 12 16 16 N 1.31856 * 120.76288 * 359.97438 * 15 14 13 17 17 C 1.31883 * 121.72475 * 359.71068 * 16 15 14 18 18 C 1.50703 * 119.61835 * 180.31202 * 17 16 15 19 19 F 1.39907 * 109.46637 * 270.26408 * 18 17 16 20 20 F 1.39895 * 109.47025 * 30.26193 * 18 17 16 21 21 F 1.39900 * 109.47297 * 150.26531 * 18 17 16 22 22 H 0.97000 * 119.99705 * 0.27145 * 1 2 3 23 23 H 1.00895 * 110.99428 * 294.25152 * 11 9 7 24 24 H 1.00894 * 111.00100 * 58.20395 * 11 9 7 25 25 H 1.07996 * 120.79184 * 359.97438 * 13 12 9 26 26 H 1.08006 * 120.41699 * 179.97438 * 14 13 12 27 27 H 1.08001 * 119.61617 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6135 1.9789 -1.3935 5 1 1.3932 2.6835 0.5801 6 1 3.4835 1.4765 0.8135 7 6 2.0045 -1.1940 0.0056 8 1 1.4674 -2.1280 -0.0707 9 6 3.5073 -1.1961 0.1185 10 1 3.9118 -0.3284 -0.4026 11 7 3.8919 -1.1399 1.5352 12 6 4.0559 -2.4553 -0.5014 13 6 4.3285 -3.5641 0.2855 14 6 4.8327 -4.7005 -0.3280 15 6 5.0459 -4.6905 -1.6936 16 7 4.7750 -3.6176 -2.4106 17 6 4.2888 -2.5213 -1.8619 18 6 3.9898 -1.3246 -2.7276 19 9 5.1251 -0.5108 -2.8064 20 9 3.6341 -1.7543 -4.0105 21 9 2.9328 -0.5977 -2.1695 22 1 -0.4850 0.8401 -0.0040 23 1 3.6170 -0.2622 1.9499 24 1 3.5041 -1.9186 2.0463 25 1 4.1531 -3.5426 1.3509 26 1 5.0569 -5.5823 0.2540 27 1 5.4388 -5.5717 -2.1789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238596081.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:47 Heat of formation + Delta-G solvation = -98.729936 kcal Electronic energy + Delta-G solvation = -18697.301748 eV Core-core repulsion = 15233.817698 eV Total energy + Delta-G solvation = -3463.484049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.46048 -46.98905 -46.86765 -39.98582 -35.41703 -32.38112 -32.06274 -30.58836 -26.65952 -25.88654 -23.76581 -22.08599 -20.44198 -18.13324 -17.99781 -17.71231 -17.16069 -16.21899 -15.48420 -14.90441 -14.41629 -13.98377 -13.76533 -13.61283 -13.46913 -13.36542 -13.30994 -12.98302 -12.79477 -12.55412 -12.16963 -11.75165 -11.59393 -10.98289 -10.86517 -10.14070 -9.73669 -9.51778 -9.31558 -8.91701 -8.64794 -7.69107 -6.29593 -4.32727 1.16518 1.60423 3.12289 3.20998 3.27463 3.31011 3.90265 4.15974 4.23554 4.60534 4.98127 5.03221 5.08660 5.16205 5.26104 5.46383 5.58705 5.78106 6.01091 6.31739 6.43032 6.74165 6.91640 7.29551 8.00676 8.02418 8.16562 8.37372 8.71594 9.29727 10.82192 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.012279 C = 0.009820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.569702 B = 2279.767217 C = 2850.590219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.088 3.912 3 Si 0.865 3.135 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.201 3.799 10 H 0.061 0.939 11 N -0.854 5.854 12 C -0.021 4.021 13 C -0.072 4.072 14 C -0.146 4.146 15 C 0.072 3.928 16 N -0.449 5.449 17 C 0.028 3.972 18 C 0.510 3.490 19 F -0.186 7.186 20 F -0.177 7.177 21 F -0.129 7.129 22 H 0.268 0.732 23 H 0.335 0.665 24 H 0.327 0.673 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -5.428 -0.515 10.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.117 4.117 3 Si 0.691 3.309 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.093 0.907 9 C 0.091 3.909 10 H 0.079 0.921 11 N -0.383 5.383 12 C -0.024 4.024 13 C -0.099 4.099 14 C -0.166 4.166 15 C -0.087 4.087 16 N -0.157 5.157 17 C -0.111 4.111 18 C 0.455 3.545 19 F -0.168 7.168 20 F -0.159 7.159 21 F -0.110 7.110 22 H 0.078 0.922 23 H 0.148 0.852 24 H 0.139 0.861 25 H 0.162 0.838 26 H 0.155 0.845 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.397 -5.337 -1.721 10.943 hybrid contribution -0.954 1.070 0.819 1.651 sum 8.444 -4.266 -0.901 9.503 Atomic orbital electron populations 1.69875 1.06323 1.27470 1.48224 1.24940 0.94657 0.98825 0.93313 0.87103 0.80436 0.83711 0.79643 1.19312 1.21353 1.18280 1.21297 0.88404 0.95173 1.52934 0.90663 1.18679 0.94767 0.90035 0.87428 0.92098 1.59681 1.66554 1.07581 1.04520 1.20917 0.90834 0.98383 0.92237 1.21434 0.96006 0.91385 1.01046 1.22265 0.98978 0.99087 0.96242 1.22515 0.99260 0.95718 0.91216 1.67076 1.09193 0.99012 1.40390 1.20688 1.04596 0.93949 0.91837 1.18179 0.75307 0.82899 0.78121 1.93164 1.52220 1.75050 1.96328 1.93153 1.91921 1.89887 1.40920 1.93512 1.55831 1.78267 1.83427 0.92187 0.85188 0.86115 0.83804 0.84549 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.43 0.77 -24.83 15 2 C 0.09 2.38 5.00 -17.82 -0.09 2.29 15 3 Si 0.86 20.54 25.01 -169.99 -4.25 16.29 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.26 -5.74 6.09 56.52 0.34 -5.39 15 7 C -0.54 -14.01 7.27 -34.44 -0.25 -14.26 15 8 H 0.08 2.18 8.05 -52.48 -0.42 1.75 15 9 C 0.20 4.49 1.75 -70.02 -0.12 4.37 15 10 H 0.06 1.45 4.36 -51.93 -0.23 1.22 15 11 N -0.85 -16.82 8.79 -6.65 -0.06 -16.88 15 12 C -0.02 -0.43 5.03 -104.48 -0.53 -0.95 15 13 C -0.07 -1.21 9.38 -39.27 -0.37 -1.58 15 14 C -0.15 -2.02 10.11 -39.44 -0.40 -2.41 15 15 C 0.07 1.07 11.18 -17.55 -0.20 0.87 15 16 N -0.45 -8.44 9.97 -9.47 -0.09 -8.54 15 17 C 0.03 0.58 6.29 -82.59 -0.52 0.06 15 18 C 0.51 10.99 2.99 36.01 0.11 11.10 15 19 F -0.19 -3.82 17.30 2.25 0.04 -3.78 15 20 F -0.18 -3.71 17.04 2.25 0.04 -3.67 15 21 F -0.13 -3.11 10.30 2.25 0.02 -3.09 15 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 23 H 0.34 6.69 7.39 -39.29 -0.29 6.40 15 24 H 0.33 5.89 7.35 -39.29 -0.29 5.60 15 25 H 0.14 2.14 6.46 -52.49 -0.34 1.80 15 26 H 0.14 1.33 8.06 -52.48 -0.42 0.91 15 27 H 0.16 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 239.71 15.07 3.61 3.61 Total: -1.00 -29.38 239.71 -3.89 -33.27 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -1.61 Total: 8.13 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.36 Total: -0.52 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.62 Total: -50.24 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.54 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.25 Total: 16.29 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.38 -3.89 -33.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596081.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.464 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds