Wall clock time and date at job start Mon Mar 30 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47297 * 264.47493 * 3 2 1 5 5 H 1.48504 * 109.46825 * 24.47594 * 3 2 1 6 6 H 1.48496 * 109.47106 * 144.47494 * 3 2 1 7 7 C 1.37875 * 119.99813 * 179.73001 * 2 1 3 8 8 H 1.08003 * 119.99791 * 4.95357 * 7 2 1 9 9 C 1.50700 * 120.00206 * 184.96256 * 7 2 1 10 10 H 1.08998 * 109.46503 * 325.43675 * 9 7 2 11 11 N 1.46904 * 109.47097 * 85.43954 * 9 7 2 12 12 C 1.50697 * 109.47033 * 205.43921 * 9 7 2 13 13 C 1.38674 * 120.41592 * 264.99671 * 12 9 7 14 14 C 1.38634 * 118.41552 * 180.02562 * 13 12 9 15 15 C 1.38222 * 119.16530 * 0.02562 * 14 13 12 16 16 N 1.31856 * 120.76288 * 359.97438 * 15 14 13 17 17 C 1.31883 * 121.72475 * 359.71068 * 16 15 14 18 18 C 1.50703 * 119.61835 * 180.31202 * 17 16 15 19 19 F 1.39907 * 109.46637 * 270.26408 * 18 17 16 20 20 F 1.39895 * 109.47025 * 30.26193 * 18 17 16 21 21 F 1.39900 * 109.47297 * 150.26531 * 18 17 16 22 22 H 0.97000 * 119.99705 * 0.27145 * 1 2 3 23 23 H 1.00895 * 110.99428 * 294.25152 * 11 9 7 24 24 H 1.00894 * 111.00100 * 58.20395 * 11 9 7 25 25 H 1.07996 * 120.79184 * 359.97438 * 13 12 9 26 26 H 1.08006 * 120.41699 * 179.97438 * 14 13 12 27 27 H 1.08001 * 119.61617 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6135 1.9789 -1.3935 5 1 1.3932 2.6835 0.5801 6 1 3.4835 1.4765 0.8135 7 6 2.0045 -1.1940 0.0056 8 1 1.4674 -2.1280 -0.0707 9 6 3.5073 -1.1961 0.1185 10 1 3.9118 -0.3284 -0.4026 11 7 3.8919 -1.1399 1.5352 12 6 4.0559 -2.4553 -0.5014 13 6 4.3285 -3.5641 0.2855 14 6 4.8327 -4.7005 -0.3280 15 6 5.0459 -4.6905 -1.6936 16 7 4.7750 -3.6176 -2.4106 17 6 4.2888 -2.5213 -1.8619 18 6 3.9898 -1.3246 -2.7276 19 9 5.1251 -0.5108 -2.8064 20 9 3.6341 -1.7543 -4.0105 21 9 2.9328 -0.5977 -2.1695 22 1 -0.4850 0.8401 -0.0040 23 1 3.6170 -0.2622 1.9499 24 1 3.5041 -1.9186 2.0463 25 1 4.1531 -3.5426 1.3509 26 1 5.0569 -5.5823 0.2540 27 1 5.4388 -5.5717 -2.1789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238596081.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:47 Heat of formation + Delta-G solvation = -120.990877 kcal Electronic energy + Delta-G solvation = -18698.267054 eV Core-core repulsion = 15233.817698 eV Total energy + Delta-G solvation = -3464.449356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.14759 -48.64027 -48.61561 -41.33024 -37.08873 -34.22174 -33.47903 -32.09165 -28.47341 -27.40519 -25.33484 -23.55499 -22.06344 -19.81859 -19.54650 -19.37368 -19.07445 -17.75410 -16.86300 -16.53915 -16.02654 -15.65322 -15.37747 -15.19367 -15.08935 -14.99040 -14.86266 -14.74694 -14.62812 -14.02905 -13.68459 -13.39127 -13.33442 -12.80872 -12.67036 -11.90727 -11.65780 -10.89781 -10.77151 -10.63748 -10.18886 -9.38911 -8.38169 -6.42104 -0.16637 0.29838 1.26341 1.33698 1.37496 1.63727 2.25369 2.56370 2.62315 3.00569 3.05673 3.45650 3.56937 3.96119 3.98707 4.10089 4.31236 4.38245 4.49886 4.92308 5.14646 5.28909 5.35074 5.64100 6.06148 6.40082 6.57169 6.71504 6.79961 7.23280 8.77581 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.012279 C = 0.009820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.569702 B = 2279.767217 C = 2850.590219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.041 3.959 3 Si 0.913 3.087 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.233 1.233 7 C -0.524 4.524 8 H 0.035 0.965 9 C 0.208 3.792 10 H 0.046 0.954 11 N -0.839 5.839 12 C -0.052 4.052 13 C -0.078 4.078 14 C -0.121 4.121 15 C 0.079 3.921 16 N -0.472 5.472 17 C 0.003 3.997 18 C 0.504 3.496 19 F -0.183 7.183 20 F -0.179 7.179 21 F -0.151 7.151 22 H 0.267 0.733 23 H 0.335 0.665 24 H 0.339 0.661 25 H 0.161 0.839 26 H 0.191 0.809 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -7.244 0.353 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.156 1.156 7 C -0.563 4.563 8 H 0.053 0.947 9 C 0.097 3.903 10 H 0.064 0.936 11 N -0.369 5.369 12 C -0.055 4.055 13 C -0.104 4.104 14 C -0.140 4.140 15 C -0.080 4.080 16 N -0.181 5.181 17 C -0.134 4.134 18 C 0.449 3.551 19 F -0.165 7.165 20 F -0.160 7.160 21 F -0.132 7.132 22 H 0.077 0.923 23 H 0.147 0.853 24 H 0.151 0.849 25 H 0.179 0.821 26 H 0.208 0.792 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 11.608 -7.155 -0.837 13.662 hybrid contribution -1.563 1.412 0.519 2.169 sum 10.044 -5.744 -0.319 11.575 Atomic orbital electron populations 1.70002 1.08007 1.28132 1.51058 1.25591 0.95086 1.01918 0.93395 0.86315 0.80323 0.80142 0.79478 1.20193 1.21200 1.15571 1.21408 0.90636 0.93210 1.51093 0.94663 1.18409 0.92088 0.91129 0.88639 0.93634 1.59595 1.65948 1.08073 1.03235 1.20835 0.93255 0.98817 0.92625 1.21771 0.95659 0.91212 1.01782 1.22812 0.95647 0.99442 0.96100 1.23440 0.97009 0.95554 0.92030 1.67100 1.10066 0.99501 1.41401 1.20515 1.06769 0.94366 0.91711 1.18436 0.74820 0.83481 0.78351 1.93154 1.51822 1.75176 1.96344 1.93135 1.91961 1.89852 1.41043 1.93445 1.56983 1.78929 1.83857 0.92330 0.85278 0.84854 0.82105 0.79190 0.77864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.96 21.45 0.30 -55.65 15 2 C 0.04 2.24 5.00 84.65 0.42 2.67 15 3 Si 0.91 42.79 25.01 68.60 1.72 44.51 15 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 15 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 15 6 H -0.23 -9.80 6.09 99.48 0.61 -9.20 15 7 C -0.52 -27.79 7.27 25.60 0.19 -27.60 15 8 H 0.04 2.11 8.05 -2.91 -0.02 2.09 15 9 C 0.21 9.22 1.75 43.42 0.08 9.29 15 10 H 0.05 2.16 4.36 -2.39 -0.01 2.15 15 11 N -0.84 -31.65 8.79 -174.95 -1.54 -33.19 15 12 C -0.05 -2.07 5.03 -19.77 -0.10 -2.17 15 13 C -0.08 -2.36 9.38 22.47 0.21 -2.15 15 14 C -0.12 -2.71 10.11 22.36 0.23 -2.48 15 15 C 0.08 1.99 11.18 84.69 0.95 2.93 15 16 N -0.47 -16.74 9.97 -183.88 -1.83 -18.57 15 17 C 0.00 0.13 6.29 42.54 0.27 0.39 15 18 C 0.50 21.97 2.99 71.24 0.21 22.18 15 19 F -0.18 -7.56 17.30 44.97 0.78 -6.79 15 20 F -0.18 -7.57 17.04 44.97 0.77 -6.80 15 21 F -0.15 -7.47 10.30 44.97 0.46 -7.00 15 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 23 H 0.33 12.77 7.39 -89.70 -0.66 12.11 15 24 H 0.34 11.51 7.35 -89.70 -0.66 10.85 15 25 H 0.16 4.19 6.46 -2.91 -0.02 4.17 15 26 H 0.19 2.25 8.06 -2.91 -0.02 2.23 15 27 H 0.20 3.15 8.06 -2.91 -0.02 3.13 15 Total: -1.00 -66.43 239.71 2.93 -63.50 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.17 Total: 16.92 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 2.45 Total: 3.06 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -3.07 Total: -107.41 kcal Atomic # 9 Polarization: -22.60 SS G_CDS: 2.01 Total: -20.59 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.72 Total: 44.51 kcal Total: -66.43 2.93 -63.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596081.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.486 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds