Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86805 * 119.99475 * 2 1 4 4 H 1.48501 * 109.47222 * 269.99642 * 3 2 1 5 5 H 1.48503 * 109.47461 * 30.00048 * 3 2 1 6 6 H 1.48505 * 109.46829 * 149.99824 * 3 2 1 7 7 C 1.37870 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00294 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47398 * 300.00007 * 9 7 2 11 11 N 1.46905 * 109.46968 * 59.99741 * 9 7 2 12 12 C 1.50699 * 109.47196 * 179.97438 * 9 7 2 13 13 C 1.38677 * 120.78761 * 264.97770 * 12 9 7 14 14 C 1.38184 * 119.16194 * 180.02562 * 13 12 9 15 15 N 1.31888 * 120.76199 * 359.97438 * 14 13 12 16 16 C 1.31854 * 121.72838 * 0.02562 * 15 14 13 17 17 C 1.38215 * 120.76332 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.41903 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.46844 * 359.97438 * 18 17 16 20 20 F 1.39906 * 109.47145 * 119.99737 * 18 17 16 21 21 F 1.39904 * 109.47063 * 239.99720 * 18 17 16 22 22 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.00900 * 110.99534 * 60.00150 * 11 9 7 24 24 H 1.00905 * 110.99571 * 183.95121 * 11 9 7 25 25 H 1.07996 * 120.42283 * 359.97438 * 13 12 9 26 26 H 1.07999 * 119.61911 * 180.02562 * 14 13 12 27 27 H 1.07994 * 119.61438 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2306 -3.6445 0.0005 13 6 2.6126 -4.2517 -1.1862 14 6 3.5124 -5.2997 -1.1471 15 7 4.0064 -5.7222 0.0004 16 6 3.6658 -5.1688 1.1477 17 6 2.7702 -4.1168 1.1869 18 6 2.3868 -3.4896 2.5025 19 9 3.0619 -4.1378 3.5424 20 9 2.7357 -2.1348 2.4925 21 9 1.0066 -3.6144 2.6940 22 1 -0.4850 0.8400 -0.0004 23 1 0.9654 -2.5259 -2.0381 24 1 -0.1568 -3.4139 -1.1907 25 1 2.2113 -3.9106 -2.1290 26 1 3.8154 -5.7777 -2.0670 27 1 4.0917 -5.5418 2.0674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238596400.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = -109.753593 kcal Electronic energy + Delta-G solvation = -18466.167854 eV Core-core repulsion = 15002.205783 eV Total energy + Delta-G solvation = -3463.962071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.54228 -47.14998 -46.81201 -39.99055 -35.37120 -32.28610 -31.83164 -30.22426 -26.46788 -25.74008 -23.81755 -22.05480 -20.66321 -18.01216 -17.78249 -17.71173 -16.64260 -16.14099 -15.75877 -14.67122 -14.40702 -14.09576 -13.89216 -13.75203 -13.52090 -13.42403 -13.06800 -13.03770 -12.79865 -12.63593 -12.32699 -11.63901 -11.02396 -10.90539 -10.77607 -10.15786 -9.72809 -9.30277 -9.10337 -8.81243 -8.50034 -7.37012 -5.98020 -4.13699 1.10472 1.58219 3.23681 3.29726 3.36911 3.40867 3.90449 4.24292 4.42564 4.60783 4.65199 5.04573 5.06539 5.25776 5.29181 5.44267 5.70537 5.85984 6.05734 6.36623 6.41813 6.84338 7.19373 7.77949 7.95727 8.05919 8.40611 8.77871 8.96553 9.54956 11.06605 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.010590 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.137605 B = 2643.349174 C = 3152.653577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.088 3.912 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.238 3.762 10 H 0.068 0.932 11 N -0.805 5.805 12 C 0.018 3.982 13 C -0.187 4.187 14 C 0.118 3.882 15 N -0.504 5.504 16 C 0.141 3.859 17 C -0.241 4.241 18 C 0.516 3.484 19 F -0.192 7.192 20 F -0.150 7.150 21 F -0.176 7.176 22 H 0.258 0.742 23 H 0.320 0.680 24 H 0.301 0.699 25 H 0.139 0.861 26 H 0.156 0.844 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -8.360 0.790 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.120 4.120 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.127 3.873 10 H 0.085 0.915 11 N -0.331 5.331 12 C 0.007 3.993 13 C -0.207 4.207 14 C -0.037 4.037 15 N -0.213 5.213 16 C -0.017 4.017 17 C -0.246 4.246 18 C 0.461 3.539 19 F -0.173 7.173 20 F -0.131 7.131 21 F -0.157 7.157 22 H 0.068 0.932 23 H 0.134 0.866 24 H 0.112 0.888 25 H 0.157 0.843 26 H 0.173 0.827 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.288 -8.230 1.064 9.341 hybrid contribution 0.404 0.847 -0.080 0.942 sum 4.691 -7.383 0.984 8.803 Atomic orbital electron populations 1.70093 1.05688 1.26052 1.45867 1.24874 0.94658 0.98583 0.93840 0.86694 0.80119 0.83653 0.78101 1.20633 1.21098 1.19812 1.20579 0.92070 0.88476 1.55415 0.92658 1.18682 0.87666 0.88437 0.92466 0.91485 1.59115 1.27697 1.42248 1.04071 1.22315 0.92898 0.93476 0.90562 1.22002 1.01055 0.98433 0.99228 1.22854 0.91817 0.92916 0.96100 1.67793 1.25519 1.29811 0.98223 1.22556 0.91689 0.90472 0.96972 1.20948 1.06730 1.03016 0.93857 1.18022 0.74662 0.77531 0.83709 1.93099 1.80528 1.81834 1.61852 1.93359 1.91489 1.31766 1.96451 1.93172 1.31146 1.95777 1.95643 0.93195 0.86636 0.88781 0.84335 0.82682 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.78 12.77 55.43 0.71 -23.07 15 2 C 0.09 2.38 5.39 -17.82 -0.10 2.29 15 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 15 7 C -0.53 -13.76 6.96 -34.45 -0.24 -14.00 15 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 15 9 C 0.24 5.54 2.24 -70.02 -0.16 5.38 15 10 H 0.07 1.75 5.93 -51.93 -0.31 1.44 15 11 N -0.80 -17.53 8.16 -6.65 -0.05 -17.58 15 12 C 0.02 0.35 4.98 -104.32 -0.52 -0.16 15 13 C -0.19 -3.12 9.34 -39.44 -0.37 -3.49 15 14 C 0.12 1.77 11.18 -17.55 -0.20 1.57 15 15 N -0.50 -8.25 10.36 -13.26 -0.14 -8.38 15 16 C 0.14 2.34 10.59 -17.55 -0.19 2.15 15 17 C -0.24 -4.54 5.38 -104.48 -0.56 -5.10 15 18 C 0.52 9.97 2.85 36.01 0.10 10.08 15 19 F -0.19 -3.22 16.00 2.25 0.04 -3.19 15 20 F -0.15 -3.30 15.09 2.25 0.03 -3.26 15 21 F -0.18 -3.56 15.45 2.25 0.03 -3.52 15 22 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 23 H 0.32 6.46 7.29 -39.29 -0.29 6.18 15 24 H 0.30 5.82 9.06 -39.29 -0.36 5.46 15 25 H 0.14 2.07 6.43 -52.49 -0.34 1.74 15 26 H 0.16 1.74 8.06 -52.49 -0.42 1.31 15 27 H 0.16 2.23 7.17 -52.49 -0.38 1.85 15 LS Contribution 247.59 15.07 3.73 3.73 Total: -1.00 -28.92 247.59 -4.52 -33.44 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -1.63 Total: 7.13 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.22 Total: -1.28 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.52 Total: -49.04 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 0.10 Total: -9.97 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.92 -4.52 -33.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596400.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.314 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds