Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86805 * 119.99475 * 2 1 4 4 H 1.48501 * 109.47222 * 269.99642 * 3 2 1 5 5 H 1.48503 * 109.47461 * 30.00048 * 3 2 1 6 6 H 1.48505 * 109.46829 * 149.99824 * 3 2 1 7 7 C 1.37870 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00294 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47398 * 300.00007 * 9 7 2 11 11 N 1.46905 * 109.46968 * 59.99741 * 9 7 2 12 12 C 1.50699 * 109.47196 * 179.97438 * 9 7 2 13 13 C 1.38677 * 120.78761 * 264.97770 * 12 9 7 14 14 C 1.38184 * 119.16194 * 180.02562 * 13 12 9 15 15 N 1.31888 * 120.76199 * 359.97438 * 14 13 12 16 16 C 1.31854 * 121.72838 * 0.02562 * 15 14 13 17 17 C 1.38215 * 120.76332 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.41903 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.46844 * 359.97438 * 18 17 16 20 20 F 1.39906 * 109.47145 * 119.99737 * 18 17 16 21 21 F 1.39904 * 109.47063 * 239.99720 * 18 17 16 22 22 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.00900 * 110.99534 * 60.00150 * 11 9 7 24 24 H 1.00905 * 110.99571 * 183.95121 * 11 9 7 25 25 H 1.07996 * 120.42283 * 359.97438 * 13 12 9 26 26 H 1.07999 * 119.61911 * 180.02562 * 14 13 12 27 27 H 1.07994 * 119.61438 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2306 -3.6445 0.0005 13 6 2.6126 -4.2517 -1.1862 14 6 3.5124 -5.2997 -1.1471 15 7 4.0064 -5.7222 0.0004 16 6 3.6658 -5.1688 1.1477 17 6 2.7702 -4.1168 1.1869 18 6 2.3868 -3.4896 2.5025 19 9 3.0619 -4.1378 3.5424 20 9 2.7357 -2.1348 2.4925 21 9 1.0066 -3.6144 2.6940 22 1 -0.4850 0.8400 -0.0004 23 1 0.9654 -2.5259 -2.0381 24 1 -0.1568 -3.4139 -1.1907 25 1 2.2113 -3.9106 -2.1290 26 1 3.8154 -5.7777 -2.0670 27 1 4.0917 -5.5418 2.0674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238596400.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = -129.654177 kcal Electronic energy + Delta-G solvation = -18467.030808 eV Core-core repulsion = 15002.205783 eV Total energy + Delta-G solvation = -3464.825025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.08203 -48.64647 -48.44196 -41.33762 -37.03672 -34.07458 -33.32704 -31.74800 -28.32774 -27.19572 -25.46248 -23.46294 -22.28374 -19.51272 -19.34661 -19.19978 -18.60231 -17.52954 -17.16214 -16.49243 -16.06921 -15.57360 -15.42180 -15.29213 -14.97315 -14.89887 -14.67362 -14.65069 -14.37620 -14.32550 -13.83150 -13.38147 -12.80684 -12.74586 -12.44102 -12.00105 -11.54093 -10.68190 -10.60781 -10.48396 -10.29183 -9.05658 -8.01621 -6.20958 -0.20778 0.18932 1.41200 1.43918 1.52217 1.74343 2.43565 2.61585 2.78237 3.13812 3.23456 3.44918 3.52444 3.78060 3.87414 4.11229 4.31719 4.43386 4.62728 4.91600 4.98547 5.42458 5.54098 5.71970 6.05053 6.56910 6.77824 7.03368 7.17320 7.49991 9.02493 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.010590 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.137605 B = 2643.349174 C = 3152.653577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.044 0.956 9 C 0.243 3.757 10 H 0.033 0.967 11 N -0.816 5.816 12 C -0.007 4.007 13 C -0.186 4.186 14 C 0.133 3.867 15 N -0.506 5.506 16 C 0.147 3.853 17 C -0.256 4.256 18 C 0.514 3.486 19 F -0.176 7.176 20 F -0.171 7.171 21 F -0.185 7.185 22 H 0.256 0.744 23 H 0.330 0.670 24 H 0.316 0.684 25 H 0.155 0.845 26 H 0.201 0.799 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -9.567 -0.171 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.062 0.938 9 C 0.133 3.867 10 H 0.050 0.950 11 N -0.344 5.344 12 C -0.017 4.017 13 C -0.206 4.206 14 C -0.022 4.022 15 N -0.215 5.215 16 C -0.010 4.010 17 C -0.260 4.260 18 C 0.460 3.540 19 F -0.157 7.157 20 F -0.152 7.152 21 F -0.167 7.167 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.128 0.872 25 H 0.172 0.828 26 H 0.218 0.782 27 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.663 -9.447 0.104 11.015 hybrid contribution 0.022 1.110 0.221 1.131 sum 5.685 -8.338 0.324 10.097 Atomic orbital electron populations 1.70201 1.06840 1.26447 1.47691 1.25526 0.95318 1.01413 0.93980 0.85860 0.78802 0.80476 0.78246 1.19847 1.21091 1.19963 1.20780 0.91642 0.90067 1.54056 0.93773 1.18226 0.87889 0.88944 0.91648 0.94960 1.58878 1.28118 1.43457 1.03958 1.22012 0.93588 0.93682 0.92447 1.22204 1.01181 0.98579 0.98596 1.23525 0.89888 0.91563 0.97210 1.67932 1.25420 1.29621 0.98523 1.22899 0.90580 0.89342 0.98209 1.20984 1.07921 1.04154 0.92956 1.18159 0.74352 0.76796 0.84741 1.93118 1.80073 1.81293 1.61260 1.93304 1.91638 1.33650 1.96633 1.93149 1.32033 1.95739 1.95767 0.93467 0.85608 0.87230 0.82761 0.78210 0.79901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.19 12.77 21.45 0.27 -49.91 15 2 C 0.04 2.28 5.39 84.65 0.46 2.73 15 3 Si 0.94 43.40 29.54 68.60 2.03 45.43 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 15 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 15 7 C -0.53 -27.72 6.96 25.60 0.18 -27.55 15 8 H 0.04 2.37 7.74 -2.91 -0.02 2.35 15 9 C 0.24 11.44 2.24 43.42 0.10 11.53 15 10 H 0.03 1.75 5.93 -2.39 -0.01 1.73 15 11 N -0.82 -35.32 8.16 -174.95 -1.43 -36.75 15 12 C -0.01 -0.27 4.98 -19.67 -0.10 -0.37 15 13 C -0.19 -5.72 9.34 22.36 0.21 -5.51 15 14 C 0.13 3.45 11.18 84.67 0.95 4.39 15 15 N -0.51 -14.74 10.36 -195.85 -2.03 -16.77 15 16 C 0.15 4.51 10.59 84.68 0.90 5.41 15 17 C -0.26 -9.38 5.38 -19.77 -0.11 -9.49 15 18 C 0.51 19.91 2.85 71.24 0.20 20.11 15 19 F -0.18 -5.76 16.00 44.97 0.72 -5.04 15 20 F -0.17 -7.68 15.09 44.97 0.68 -7.00 15 21 F -0.19 -7.66 15.45 44.97 0.69 -6.97 15 22 H 0.26 14.11 8.31 -92.71 -0.77 13.34 15 23 H 0.33 12.99 7.29 -89.69 -0.65 12.33 15 24 H 0.32 12.05 9.06 -89.69 -0.81 11.23 15 25 H 0.15 4.18 6.43 -2.91 -0.02 4.16 15 26 H 0.20 3.35 8.06 -2.91 -0.02 3.32 15 27 H 0.18 4.59 7.17 -2.91 -0.02 4.57 15 Total: -1.00 -61.91 247.59 3.50 -58.40 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.22 Total: 17.33 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 2.78 Total: 1.27 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.18 Total: -103.43 kcal Atomic # 9 Polarization: -21.10 SS G_CDS: 2.09 Total: -19.00 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -61.91 3.50 -58.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596400.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.250 kcal (2) G-P(sol) polarization free energy of solvation -61.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds