Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47210 * 264.98983 * 3 2 1 5 5 H 1.48497 * 109.46967 * 24.99237 * 3 2 1 6 6 H 1.48500 * 109.47031 * 144.99177 * 3 2 1 7 7 C 1.37876 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 189.48297 * 7 2 1 9 9 C 1.50695 * 120.00134 * 9.48193 * 7 2 1 10 10 H 1.09008 * 109.47103 * 305.47448 * 9 7 2 11 11 N 1.46902 * 109.47120 * 65.47079 * 9 7 2 12 12 C 1.50706 * 109.47264 * 185.47503 * 9 7 2 13 13 C 1.38222 * 120.41523 * 265.02133 * 12 9 7 14 14 N 1.31859 * 120.76034 * 179.97438 * 13 12 9 15 15 C 1.31887 * 121.72648 * 0.02562 * 14 13 12 16 16 C 1.38176 * 120.76374 * 359.97438 * 15 14 13 17 17 C 1.38615 * 120.41699 * 84.99666 * 12 9 7 18 18 C 1.50699 * 120.79550 * 359.75065 * 17 12 9 19 19 F 1.39899 * 109.47237 * 179.97438 * 18 17 12 20 20 F 1.39898 * 109.47192 * 300.00000 * 18 17 12 21 21 F 1.39906 * 109.47113 * 59.99616 * 18 17 12 22 22 H 0.97003 * 120.00010 * 359.97438 * 1 2 3 23 23 H 1.00895 * 110.99924 * 293.63012 * 11 9 7 24 24 H 1.00900 * 110.99965 * 57.59033 * 11 9 7 25 25 H 1.08004 * 119.62318 * 359.97335 * 13 12 9 26 26 H 1.07996 * 119.61816 * 179.97438 * 15 14 13 27 27 H 1.08002 * 120.41684 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6025 1.9854 -1.3947 5 1 1.3976 2.6809 0.5915 6 1 3.4898 1.4731 0.8032 7 6 2.0046 -1.1940 -0.0005 8 1 3.0735 -1.2004 0.1536 9 6 1.2666 -2.4901 -0.2161 10 1 0.4562 -2.5717 0.5084 11 7 0.7119 -2.5174 -1.5761 12 6 2.2177 -3.6454 -0.0381 13 6 2.8486 -4.2074 -1.1320 14 7 3.6825 -5.2181 -0.9840 15 6 3.9470 -5.7310 0.2019 16 6 3.3537 -5.2211 1.3408 17 6 2.4712 -4.1576 1.2248 18 6 1.8082 -3.5690 2.4434 19 9 2.2293 -4.2616 3.5837 20 9 2.1601 -2.2201 2.5601 21 9 0.4192 -3.6794 2.3177 22 1 -0.4850 0.8401 0.0004 23 1 -0.0052 -1.8167 -1.6883 24 1 1.4397 -2.4038 -2.2657 25 1 2.6565 -3.8142 -2.1194 26 1 4.6354 -6.5592 0.2837 27 1 3.5747 -5.6452 2.3092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238598302.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = -117.150664 kcal Electronic energy + Delta-G solvation = -18477.513495 eV Core-core repulsion = 15013.230663 eV Total energy + Delta-G solvation = -3464.282832 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.53893 -47.13948 -46.81871 -39.86529 -35.20946 -32.75201 -31.84865 -29.75957 -26.34283 -25.96055 -23.77486 -22.01623 -20.59458 -18.06415 -17.98506 -17.76636 -16.70579 -15.87005 -15.21230 -14.84067 -14.44063 -14.16456 -13.90148 -13.67513 -13.51555 -13.40705 -13.13130 -13.03942 -12.80789 -12.61695 -11.64960 -11.50667 -11.35287 -11.07040 -10.91432 -10.23518 -10.08135 -9.63651 -9.07039 -8.77428 -8.40999 -7.46983 -6.22341 -4.34195 1.29453 1.55650 3.18625 3.21942 3.26496 3.29975 4.06341 4.24842 4.29594 4.60616 4.79252 5.00422 5.07819 5.23387 5.34051 5.48534 5.91130 6.07400 6.17795 6.23099 6.62154 7.01163 7.35598 7.64058 7.87857 8.25174 8.46564 8.66119 8.82477 9.33975 10.79649 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.010667 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.124836 B = 2624.390878 C = 3147.696063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.075 3.925 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.225 3.775 10 H 0.073 0.927 11 N -0.848 5.848 12 C -0.024 4.024 13 C 0.103 3.897 14 N -0.468 5.468 15 C 0.064 3.936 16 C -0.132 4.132 17 C -0.150 4.150 18 C 0.511 3.489 19 F -0.191 7.191 20 F -0.149 7.149 21 F -0.173 7.173 22 H 0.267 0.733 23 H 0.352 0.648 24 H 0.315 0.685 25 H 0.165 0.835 26 H 0.156 0.844 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -7.195 2.406 8.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.115 3.885 10 H 0.091 0.909 11 N -0.376 5.376 12 C -0.027 4.027 13 C -0.055 4.055 14 N -0.176 5.176 15 C -0.092 4.092 16 C -0.152 4.152 17 C -0.159 4.159 18 C 0.457 3.543 19 F -0.173 7.173 20 F -0.130 7.130 21 F -0.154 7.154 22 H 0.077 0.923 23 H 0.166 0.834 24 H 0.126 0.874 25 H 0.182 0.818 26 H 0.173 0.827 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.217 -8.172 1.900 9.390 hybrid contribution 0.343 2.418 1.029 2.650 sum 4.561 -5.754 2.929 7.905 Atomic orbital electron populations 1.69900 1.05854 1.27486 1.48802 1.24943 0.94846 0.99288 0.93887 0.86545 0.79966 0.82812 0.78398 1.20375 1.21060 1.19788 1.21510 0.94550 0.90392 1.51964 0.92466 1.18302 0.91986 0.87752 0.90484 0.90928 1.59512 1.16644 1.56728 1.04714 1.21393 0.95071 0.95049 0.91225 1.22651 0.91801 0.91655 0.99393 1.67629 1.13503 1.09960 1.26526 1.22520 0.99473 0.99833 0.87377 1.21870 0.96381 0.95710 1.01191 1.20267 1.02277 0.99806 0.93597 1.18110 0.76852 0.77185 0.82200 1.93101 1.90089 1.79798 1.54301 1.93355 1.91447 1.32172 1.96046 1.93186 1.30597 1.95854 1.95754 0.92314 0.83364 0.87449 0.81800 0.82700 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.66 12.32 55.43 0.68 -22.97 15 2 C 0.07 1.94 5.31 -17.82 -0.09 1.85 15 3 Si 0.90 20.51 29.55 -169.99 -5.02 15.49 15 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.54 -13.91 6.88 -34.44 -0.24 -14.14 15 8 H 0.06 1.50 7.76 -52.48 -0.41 1.10 15 9 C 0.23 5.30 2.20 -70.02 -0.15 5.15 15 10 H 0.07 1.92 5.85 -51.92 -0.30 1.61 15 11 N -0.85 -18.50 8.75 -6.65 -0.06 -18.56 15 12 C -0.02 -0.51 4.98 -104.49 -0.52 -1.03 15 13 C 0.10 1.96 10.44 -17.55 -0.18 1.78 15 14 N -0.47 -8.26 10.36 -13.25 -0.14 -8.39 15 15 C 0.06 0.97 11.18 -17.55 -0.20 0.78 15 16 C -0.13 -2.09 9.50 -39.44 -0.37 -2.46 15 17 C -0.15 -2.89 5.40 -104.32 -0.56 -3.46 15 18 C 0.51 10.14 2.85 36.01 0.10 10.24 15 19 F -0.19 -3.30 16.08 2.25 0.04 -3.26 15 20 F -0.15 -3.34 15.11 2.25 0.03 -3.31 15 21 F -0.17 -3.63 15.44 2.25 0.03 -3.59 15 22 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 23 H 0.35 8.22 7.95 -39.29 -0.31 7.90 15 24 H 0.32 6.33 7.35 -39.29 -0.29 6.04 15 25 H 0.16 2.91 6.37 -52.48 -0.33 2.57 15 26 H 0.16 1.75 8.06 -52.49 -0.42 1.32 15 27 H 0.14 1.79 7.27 -52.49 -0.38 1.41 15 LS Contribution 246.61 15.07 3.72 3.72 Total: -1.00 -27.08 246.61 -4.52 -31.60 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -1.59 Total: 10.59 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.22 Total: -1.30 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.49 Total: -49.93 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 0.11 Total: -10.17 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.08 -4.52 -31.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598302.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.549 kcal (2) G-P(sol) polarization free energy of solvation -27.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds