Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47210 * 264.98983 * 3 2 1 5 5 H 1.48497 * 109.46967 * 24.99237 * 3 2 1 6 6 H 1.48500 * 109.47031 * 144.99177 * 3 2 1 7 7 C 1.37876 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 189.48297 * 7 2 1 9 9 C 1.50695 * 120.00134 * 9.48193 * 7 2 1 10 10 H 1.09008 * 109.47103 * 305.47448 * 9 7 2 11 11 N 1.46902 * 109.47120 * 65.47079 * 9 7 2 12 12 C 1.50706 * 109.47264 * 185.47503 * 9 7 2 13 13 C 1.38222 * 120.41523 * 265.02133 * 12 9 7 14 14 N 1.31859 * 120.76034 * 179.97438 * 13 12 9 15 15 C 1.31887 * 121.72648 * 0.02562 * 14 13 12 16 16 C 1.38176 * 120.76374 * 359.97438 * 15 14 13 17 17 C 1.38615 * 120.41699 * 84.99666 * 12 9 7 18 18 C 1.50699 * 120.79550 * 359.75065 * 17 12 9 19 19 F 1.39899 * 109.47237 * 179.97438 * 18 17 12 20 20 F 1.39898 * 109.47192 * 300.00000 * 18 17 12 21 21 F 1.39906 * 109.47113 * 59.99616 * 18 17 12 22 22 H 0.97003 * 120.00010 * 359.97438 * 1 2 3 23 23 H 1.00895 * 110.99924 * 293.63012 * 11 9 7 24 24 H 1.00900 * 110.99965 * 57.59033 * 11 9 7 25 25 H 1.08004 * 119.62318 * 359.97335 * 13 12 9 26 26 H 1.07996 * 119.61816 * 179.97438 * 15 14 13 27 27 H 1.08002 * 120.41684 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6025 1.9854 -1.3947 5 1 1.3976 2.6809 0.5915 6 1 3.4898 1.4731 0.8032 7 6 2.0046 -1.1940 -0.0005 8 1 3.0735 -1.2004 0.1536 9 6 1.2666 -2.4901 -0.2161 10 1 0.4562 -2.5717 0.5084 11 7 0.7119 -2.5174 -1.5761 12 6 2.2177 -3.6454 -0.0381 13 6 2.8486 -4.2074 -1.1320 14 7 3.6825 -5.2181 -0.9840 15 6 3.9470 -5.7310 0.2019 16 6 3.3537 -5.2211 1.3408 17 6 2.4712 -4.1576 1.2248 18 6 1.8082 -3.5690 2.4434 19 9 2.2293 -4.2616 3.5837 20 9 2.1601 -2.2201 2.5601 21 9 0.4192 -3.6794 2.3177 22 1 -0.4850 0.8401 0.0004 23 1 -0.0052 -1.8167 -1.6883 24 1 1.4397 -2.4038 -2.2657 25 1 2.6565 -3.8142 -2.1194 26 1 4.6354 -6.5592 0.2837 27 1 3.5747 -5.6452 2.3092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238598302.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = -135.402407 kcal Electronic energy + Delta-G solvation = -18478.304950 eV Core-core repulsion = 15013.230663 eV Total energy + Delta-G solvation = -3465.074287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.11554 -48.67301 -48.48290 -41.26550 -36.94546 -34.27020 -33.62050 -31.28384 -28.15252 -27.52732 -25.39830 -23.48573 -22.22678 -19.54574 -19.52001 -19.37537 -18.66538 -17.36467 -16.85601 -16.39241 -15.93170 -15.77299 -15.48485 -15.20524 -15.06401 -14.97507 -14.76634 -14.70077 -14.52187 -14.17487 -13.32140 -13.14824 -13.06092 -12.94495 -12.60659 -12.07715 -11.85523 -11.07706 -10.71028 -10.46833 -9.91972 -9.30198 -8.17948 -6.36013 -0.12297 0.18387 1.36219 1.39326 1.47161 1.68586 2.35611 2.70046 2.74267 3.04516 3.10718 3.48400 3.53306 3.82046 3.98917 4.11012 4.45482 4.62208 4.71294 4.84221 5.03401 5.53381 5.61739 5.64993 5.96484 6.59863 6.70789 6.92055 7.02163 7.34616 8.81649 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.010667 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.124836 B = 2624.390878 C = 3147.696063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.045 0.955 9 C 0.231 3.769 10 H 0.038 0.962 11 N -0.838 5.838 12 C -0.057 4.057 13 C 0.098 3.902 14 N -0.475 5.475 15 C 0.080 3.920 16 C -0.120 4.120 17 C -0.163 4.163 18 C 0.509 3.491 19 F -0.174 7.174 20 F -0.170 7.170 21 F -0.184 7.184 22 H 0.267 0.733 23 H 0.342 0.658 24 H 0.326 0.674 25 H 0.168 0.832 26 H 0.206 0.794 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 -8.553 2.546 10.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.169 4.169 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.063 0.937 9 C 0.120 3.880 10 H 0.056 0.944 11 N -0.366 5.366 12 C -0.060 4.060 13 C -0.059 4.059 14 N -0.183 5.183 15 C -0.077 4.077 16 C -0.140 4.140 17 C -0.173 4.173 18 C 0.455 3.545 19 F -0.155 7.155 20 F -0.151 7.151 21 F -0.166 7.166 22 H 0.076 0.924 23 H 0.155 0.845 24 H 0.137 0.863 25 H 0.185 0.815 26 H 0.222 0.778 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.939 -9.533 2.021 11.412 hybrid contribution -0.129 2.704 1.053 2.904 sum 5.810 -6.829 3.074 9.478 Atomic orbital electron populations 1.69993 1.06861 1.27972 1.49893 1.25572 0.95483 1.01912 0.93910 0.85723 0.78582 0.79694 0.78577 1.19446 1.21031 1.20181 1.21649 0.93945 0.91706 1.51238 0.93701 1.18007 0.91388 0.88471 0.90103 0.94398 1.59457 1.16604 1.56038 1.04482 1.21173 0.96375 0.95629 0.92779 1.22644 0.92095 0.92165 0.98993 1.67725 1.13172 1.09515 1.27877 1.23375 0.98473 0.99701 0.86101 1.22296 0.94485 0.93957 1.03248 1.20421 1.03270 1.01046 0.92519 1.18249 0.76461 0.76534 0.83242 1.93124 1.89799 1.79166 1.53429 1.93304 1.91571 1.33991 1.96231 1.93160 1.31667 1.95831 1.95894 0.92375 0.84520 0.86333 0.81508 0.77781 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.65 12.32 21.45 0.26 -49.38 15 2 C 0.03 1.73 5.31 84.65 0.45 2.18 15 3 Si 0.95 42.32 29.55 68.60 2.03 44.35 15 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.55 -28.29 6.88 25.60 0.18 -28.11 15 8 H 0.04 2.39 7.76 -2.91 -0.02 2.37 15 9 C 0.23 11.10 2.20 43.42 0.10 11.20 15 10 H 0.04 2.08 5.85 -2.38 -0.01 2.07 15 11 N -0.84 -37.20 8.75 -174.94 -1.53 -38.73 15 12 C -0.06 -2.35 4.98 -19.78 -0.10 -2.45 15 13 C 0.10 3.60 10.44 84.68 0.88 4.48 15 14 N -0.47 -15.36 10.36 -195.85 -2.03 -17.39 15 15 C 0.08 2.08 11.18 84.67 0.95 3.03 15 16 C -0.12 -3.38 9.50 22.36 0.21 -3.16 15 17 C -0.16 -6.08 5.40 -19.67 -0.11 -6.19 15 18 C 0.51 20.03 2.85 71.24 0.20 20.23 15 19 F -0.17 -5.68 16.08 44.97 0.72 -4.96 15 20 F -0.17 -7.71 15.11 44.97 0.68 -7.03 15 21 F -0.18 -7.87 15.44 44.97 0.69 -7.18 15 22 H 0.27 13.96 8.31 -92.71 -0.77 13.19 15 23 H 0.34 16.36 7.95 -89.70 -0.71 15.64 15 24 H 0.33 13.17 7.35 -89.69 -0.66 12.51 15 25 H 0.17 5.82 6.37 -2.91 -0.02 5.80 15 26 H 0.21 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.17 3.62 7.27 -2.91 -0.02 3.60 15 Total: -1.00 -58.59 246.61 3.47 -55.12 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.12 Total: 23.99 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 2.76 Total: 1.21 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.30 Total: -105.50 kcal Atomic # 9 Polarization: -21.27 SS G_CDS: 2.10 Total: -19.17 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -58.59 3.47 -55.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598302.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.285 kcal (2) G-P(sol) polarization free energy of solvation -58.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds