Wall clock time and date at job start Mon Mar 30 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 N 1.31891 * 119.61701 * 285.00266 * 12 9 7 14 14 C 1.31854 * 121.72492 * 179.97438 * 13 12 9 15 15 C 1.38220 * 120.76492 * 359.97438 * 14 13 12 16 16 C 1.38634 * 119.16109 * 0.02562 * 15 14 13 17 17 C 1.38185 * 119.61702 * 104.72115 * 12 9 7 18 18 C 1.50700 * 120.41709 * 0.02935 * 17 12 9 19 19 F 1.39895 * 109.46625 * 179.97438 * 18 17 12 20 20 F 1.39898 * 109.47055 * 299.99615 * 18 17 12 21 21 F 1.39895 * 109.47260 * 59.99862 * 18 17 12 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 24 24 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 25 25 H 1.08003 * 119.61307 * 179.97438 * 14 13 12 26 26 H 1.07997 * 120.42194 * 180.02562 * 15 14 13 27 27 H 1.08003 * 120.78648 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 7 2.8795 -3.9472 -1.1070 14 6 3.7456 -4.9402 -1.1537 15 6 4.0055 -5.7051 -0.0321 16 6 3.3422 -5.4169 1.1506 17 6 2.4421 -4.3621 1.1624 18 6 1.7003 -4.0059 2.4249 19 9 2.0859 -4.8732 3.4526 20 9 2.0024 -2.6890 2.7876 21 9 0.3237 -4.1253 2.2065 22 1 -0.4850 0.8400 -0.0004 23 1 0.9652 -2.5259 -2.0381 24 1 -0.1571 -3.4138 -1.1907 25 1 4.2579 -5.1585 -2.0791 26 1 4.7164 -6.5169 -0.0765 27 1 3.5254 -5.9973 2.0428 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238600126.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:52 Heat of formation + Delta-G solvation = -109.014279 kcal Electronic energy + Delta-G solvation = -18403.608280 eV Core-core repulsion = 14939.678268 eV Total energy + Delta-G solvation = -3463.930012 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.66880 -47.25222 -46.95107 -39.96838 -34.71830 -32.69539 -31.80891 -30.20759 -26.27563 -25.75773 -23.78641 -22.13059 -20.62635 -18.12971 -17.89820 -17.88824 -16.46850 -16.17410 -15.62293 -14.55575 -14.16883 -14.06017 -13.94835 -13.81655 -13.54782 -13.48204 -13.22995 -13.16701 -12.81841 -12.57991 -12.27802 -11.51282 -11.09788 -10.75846 -10.75256 -10.03571 -9.76369 -9.37870 -9.19020 -8.60348 -8.39248 -7.14327 -5.86915 -4.01361 1.12430 1.48737 3.14115 3.38585 3.42278 3.45126 3.95084 4.16928 4.50325 4.50912 4.78776 4.94365 4.96695 5.09575 5.32860 5.40598 5.58624 5.99353 6.14092 6.26437 6.36062 6.86852 7.22919 7.89648 8.07247 8.31925 8.62034 9.01775 9.10157 9.65480 11.17976 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.010173 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.673025 B = 2751.707519 C = 3231.387160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.087 3.913 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.253 3.747 10 H 0.065 0.935 11 N -0.798 5.798 12 C 0.187 3.813 13 N -0.475 5.475 14 C 0.126 3.874 15 C -0.207 4.207 16 C -0.032 4.032 17 C -0.248 4.248 18 C 0.516 3.484 19 F -0.190 7.190 20 F -0.156 7.156 21 F -0.173 7.173 22 H 0.258 0.742 23 H 0.330 0.670 24 H 0.296 0.704 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -11.241 2.227 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.121 4.121 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.142 3.858 10 H 0.082 0.918 11 N -0.323 5.323 12 C 0.047 3.953 13 N -0.184 5.184 14 C -0.032 4.032 15 C -0.227 4.227 16 C -0.058 4.058 17 C -0.253 4.253 18 C 0.461 3.539 19 F -0.172 7.172 20 F -0.137 7.137 21 F -0.154 7.154 22 H 0.068 0.932 23 H 0.143 0.857 24 H 0.106 0.894 25 H 0.173 0.827 26 H 0.154 0.846 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.823 -9.914 1.759 11.164 hybrid contribution 1.283 -0.565 0.757 1.593 sum 6.106 -10.479 2.516 12.386 Atomic orbital electron populations 1.70084 1.05627 1.25998 1.46182 1.24875 0.94680 0.98480 0.94040 0.86753 0.79722 0.83403 0.78562 1.20282 1.21208 1.20310 1.20520 0.91959 0.88697 1.54973 0.92987 1.18679 0.86723 0.87731 0.92642 0.91789 1.59169 1.27341 1.41255 1.04547 1.23716 0.92311 0.93464 0.85770 1.67801 1.07200 1.15168 1.28204 1.23074 0.92623 0.89580 0.97919 1.21950 1.03486 1.03428 0.93884 1.21367 0.91954 0.93672 0.98856 1.21019 1.05358 1.03194 0.95705 1.17995 0.77473 0.75180 0.83206 1.93100 1.91084 1.70477 1.62510 1.93321 1.92724 1.35243 1.92398 1.93190 1.32002 1.95614 1.94634 0.93227 0.85666 0.89435 0.82687 0.84635 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.70 12.77 55.43 0.71 -23.99 15 2 C 0.09 2.44 5.39 -17.82 -0.10 2.34 15 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.52 -14.51 8.68 -34.44 -0.30 -14.81 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.25 6.34 2.20 -70.02 -0.15 6.19 15 10 H 0.06 1.72 4.94 -51.93 -0.26 1.47 15 11 N -0.80 -19.35 8.49 -6.65 -0.06 -19.41 15 12 C 0.19 4.01 5.62 -82.59 -0.46 3.55 15 13 N -0.48 -9.38 9.70 -9.47 -0.09 -9.47 15 14 C 0.13 1.91 11.18 -17.55 -0.20 1.71 15 15 C -0.21 -2.74 10.11 -39.44 -0.40 -3.14 15 16 C -0.03 -0.49 9.54 -39.28 -0.37 -0.86 15 17 C -0.25 -4.70 5.38 -104.48 -0.56 -5.27 15 18 C 0.52 9.92 2.79 36.01 0.10 10.02 15 19 F -0.19 -3.13 16.05 2.25 0.04 -3.10 15 20 F -0.16 -3.40 16.14 2.25 0.04 -3.36 15 21 F -0.17 -3.47 15.53 2.25 0.03 -3.44 15 22 H 0.26 7.21 8.31 -40.82 -0.34 6.88 15 23 H 0.33 7.87 8.53 -39.29 -0.34 7.53 15 24 H 0.30 6.48 9.06 -39.29 -0.36 6.12 15 25 H 0.16 1.76 8.06 -52.48 -0.42 1.34 15 26 H 0.14 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.14 1.69 7.26 -52.48 -0.38 1.31 15 LS Contribution 252.38 15.07 3.80 3.80 Total: -1.00 -30.45 252.38 -4.71 -35.16 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -1.72 Total: 7.40 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.45 Total: -0.26 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.56 Total: -52.87 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 0.11 Total: -9.89 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.45 -4.71 -35.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238600126.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.856 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds