Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 N 1.31891 * 119.61701 * 285.00266 * 12 9 7 14 14 C 1.31854 * 121.72492 * 179.97438 * 13 12 9 15 15 C 1.38220 * 120.76492 * 359.97438 * 14 13 12 16 16 C 1.38634 * 119.16109 * 0.02562 * 15 14 13 17 17 C 1.38185 * 119.61702 * 104.72115 * 12 9 7 18 18 C 1.50700 * 120.41709 * 0.02935 * 17 12 9 19 19 F 1.39895 * 109.46625 * 179.97438 * 18 17 12 20 20 F 1.39898 * 109.47055 * 299.99615 * 18 17 12 21 21 F 1.39895 * 109.47260 * 59.99862 * 18 17 12 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 24 24 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 25 25 H 1.08003 * 119.61307 * 179.97438 * 14 13 12 26 26 H 1.07997 * 120.42194 * 180.02562 * 15 14 13 27 27 H 1.08003 * 120.78648 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 7 2.8795 -3.9472 -1.1070 14 6 3.7456 -4.9402 -1.1537 15 6 4.0055 -5.7051 -0.0321 16 6 3.3422 -5.4169 1.1506 17 6 2.4421 -4.3621 1.1624 18 6 1.7003 -4.0059 2.4249 19 9 2.0859 -4.8732 3.4526 20 9 2.0024 -2.6890 2.7876 21 9 0.3237 -4.1253 2.2065 22 1 -0.4850 0.8400 -0.0004 23 1 0.9652 -2.5259 -2.0381 24 1 -0.1571 -3.4138 -1.1907 25 1 4.2579 -5.1585 -2.0791 26 1 4.7164 -6.5169 -0.0765 27 1 3.5254 -5.9973 2.0428 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238600126.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = -131.013280 kcal Electronic energy + Delta-G solvation = -18404.562228 eV Core-core repulsion = 14939.678268 eV Total energy + Delta-G solvation = -3464.883960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.17925 -48.71134 -48.55075 -41.30482 -36.51162 -34.02366 -33.73275 -31.76183 -28.21207 -27.20784 -25.41702 -23.50138 -22.29182 -19.63284 -19.43177 -19.29211 -18.49232 -17.48969 -17.11354 -16.39676 -15.97863 -15.55425 -15.40637 -15.25700 -15.03945 -14.99952 -14.78627 -14.75211 -14.33689 -14.17015 -13.81499 -13.23930 -12.87043 -12.70412 -12.55403 -11.93465 -11.34921 -11.07380 -10.58822 -10.49080 -10.03342 -8.97955 -7.99095 -6.19069 -0.16492 0.24102 1.42619 1.44109 1.51264 1.67924 2.44686 2.66448 2.74112 3.07898 3.23927 3.44412 3.48927 3.82442 3.90787 4.15652 4.41780 4.48899 4.72919 4.91962 5.00344 5.32617 5.62291 5.72015 6.07112 6.57575 6.99501 7.07049 7.20742 7.50653 9.05166 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.010173 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.673025 B = 2751.707519 C = 3231.387160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.039 0.961 9 C 0.255 3.745 10 H 0.037 0.963 11 N -0.809 5.809 12 C 0.157 3.843 13 N -0.506 5.506 14 C 0.119 3.881 15 C -0.177 4.177 16 C -0.031 4.031 17 C -0.264 4.264 18 C 0.515 3.485 19 F -0.172 7.172 20 F -0.178 7.178 21 F -0.184 7.184 22 H 0.257 0.743 23 H 0.330 0.670 24 H 0.306 0.694 25 H 0.195 0.805 26 H 0.190 0.810 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.729 -13.044 1.997 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.167 4.167 3 Si 0.772 3.228 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.057 0.943 9 C 0.144 3.856 10 H 0.055 0.945 11 N -0.334 5.334 12 C 0.018 3.982 13 N -0.215 5.215 14 C -0.038 4.038 15 C -0.196 4.196 16 C -0.056 4.056 17 C -0.268 4.268 18 C 0.460 3.540 19 F -0.154 7.154 20 F -0.159 7.159 21 F -0.165 7.165 22 H 0.066 0.934 23 H 0.143 0.857 24 H 0.117 0.883 25 H 0.212 0.788 26 H 0.207 0.793 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.011 -11.729 1.537 13.751 hybrid contribution 0.698 -0.172 0.822 1.092 sum 7.709 -11.901 2.358 14.374 Atomic orbital electron populations 1.70205 1.06898 1.26562 1.47643 1.25606 0.95473 1.01638 0.93942 0.85823 0.78599 0.79775 0.78567 1.19848 1.20612 1.19975 1.20756 0.91472 0.90530 1.54168 0.94315 1.18244 0.87241 0.88598 0.91548 0.94526 1.59021 1.27845 1.42175 1.04395 1.22911 0.93646 0.93989 0.87687 1.67665 1.08572 1.17389 1.27858 1.23813 0.91334 0.88261 1.00395 1.22526 1.02145 1.03056 0.91902 1.21821 0.90488 0.92315 1.01010 1.21021 1.06797 1.04730 0.94299 1.18143 0.77189 0.74555 0.84134 1.93120 1.90828 1.69609 1.61814 1.93267 1.92848 1.37136 1.92673 1.93162 1.32992 1.95586 1.94766 0.93401 0.85721 0.88319 0.78787 0.79283 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.71 12.77 21.45 0.27 -52.44 15 2 C 0.04 2.14 5.39 84.65 0.46 2.60 15 3 Si 0.95 45.23 29.54 68.60 2.03 47.26 15 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 6 H -0.27 -12.84 7.11 99.48 0.71 -12.13 15 7 C -0.53 -30.22 8.68 25.60 0.22 -30.00 15 8 H 0.04 2.24 7.74 -2.91 -0.02 2.22 15 9 C 0.25 13.14 2.20 43.42 0.10 13.23 15 10 H 0.04 2.08 4.94 -2.39 -0.01 2.06 15 11 N -0.81 -40.39 8.49 -174.95 -1.48 -41.87 15 12 C 0.16 6.72 5.62 42.54 0.24 6.96 15 13 N -0.51 -19.34 9.70 -183.88 -1.78 -21.12 15 14 C 0.12 3.16 11.18 84.69 0.95 4.10 15 15 C -0.18 -3.74 10.11 22.36 0.23 -3.51 15 16 C -0.03 -0.80 9.54 22.47 0.21 -0.59 15 17 C -0.26 -9.73 5.38 -19.77 -0.11 -9.84 15 18 C 0.51 19.81 2.79 71.24 0.20 20.01 15 19 F -0.17 -5.44 16.05 44.97 0.72 -4.72 15 20 F -0.18 -7.99 16.14 44.97 0.73 -7.26 15 21 F -0.18 -7.58 15.53 44.97 0.70 -6.88 15 22 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 23 H 0.33 16.15 8.53 -89.70 -0.77 15.38 15 24 H 0.31 13.85 9.06 -89.69 -0.81 13.04 15 25 H 0.20 3.45 8.06 -2.91 -0.02 3.42 15 26 H 0.19 2.04 8.06 -2.91 -0.02 2.01 15 27 H 0.17 3.32 7.26 -2.91 -0.02 3.30 15 Total: -1.00 -68.49 252.38 3.34 -65.15 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.33 Total: 18.90 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 2.49 Total: 2.97 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -2.99 Total: -115.43 kcal Atomic # 9 Polarization: -21.00 SS G_CDS: 2.15 Total: -18.85 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.49 3.34 -65.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238600126.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.862 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds