Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47187 * 270.00138 * 3 2 1 5 5 H 1.48505 * 109.46887 * 30.00112 * 3 2 1 6 6 H 1.48499 * 109.47414 * 149.99878 * 3 2 1 7 7 C 1.37874 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00107 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46840 * 59.99937 * 9 7 2 11 11 N 1.46905 * 109.47007 * 300.00314 * 9 7 2 12 12 C 1.50697 * 109.47293 * 180.02562 * 9 7 2 13 13 C 1.38215 * 119.62061 * 124.97808 * 12 9 7 14 14 C 1.38628 * 119.16579 * 180.02562 * 13 12 9 15 15 C 1.38677 * 118.41857 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.41881 * 179.97438 * 15 14 13 17 17 F 1.39895 * 109.47034 * 90.00262 * 16 15 14 18 18 F 1.39901 * 109.47030 * 210.00076 * 16 15 14 19 19 F 1.39897 * 109.46834 * 329.99910 * 16 15 14 20 20 C 1.38184 * 119.16194 * 0.02562 * 15 14 13 21 21 N 1.31854 * 119.61606 * 305.00333 * 12 9 7 22 22 H 0.96995 * 119.99760 * 359.97438 * 1 2 3 23 23 H 1.00895 * 110.99687 * 299.99732 * 11 9 7 24 24 H 1.00903 * 110.99797 * 63.95076 * 11 9 7 25 25 H 1.08005 * 120.42066 * 0.04901 * 13 12 9 26 26 H 1.08003 * 120.79538 * 180.02562 * 14 13 12 27 27 H 1.07999 * 119.61911 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.1508 -4.6114 0.9840 14 6 3.0568 -5.6607 0.9753 15 6 4.0137 -5.6980 -0.0277 16 6 5.0211 -6.8177 -0.0799 17 9 4.5123 -7.8670 -0.8527 18 9 6.2088 -6.3501 -0.6526 19 9 5.2772 -7.2753 1.2170 20 6 4.0326 -4.6950 -0.9781 21 7 3.1536 -3.7125 -0.9395 22 1 -0.4849 0.8400 0.0004 23 1 0.9653 -2.5260 2.0381 24 1 -0.3004 -1.8577 1.1911 25 1 1.3921 -4.5505 1.7502 26 1 3.0183 -6.4307 1.7316 27 1 4.7744 -4.7171 -1.7627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238618654.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = -120.492810 kcal Electronic energy + Delta-G solvation = -17437.755324 eV Core-core repulsion = 13973.327566 eV Total energy + Delta-G solvation = -3464.427758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.07689 -47.60021 -47.54201 -39.89174 -35.09330 -32.57499 -31.93445 -30.18211 -26.84757 -25.42588 -23.35541 -22.81797 -20.59204 -18.41805 -18.36948 -18.21685 -16.69174 -15.96978 -15.84355 -14.63338 -14.43043 -14.35123 -14.32094 -14.00510 -13.76680 -13.72601 -13.68768 -13.19138 -12.94867 -12.64976 -12.32806 -11.50035 -11.38372 -10.96682 -10.90267 -10.14337 -10.05682 -9.62810 -8.97135 -8.85625 -8.52248 -7.44039 -6.19705 -4.32428 1.19392 1.59803 2.77154 3.20797 3.27728 3.31645 3.84825 4.02048 4.13449 4.29966 4.57275 4.75909 4.98465 5.09865 5.23448 5.45968 5.87998 6.03879 6.19793 6.43478 6.55271 7.00859 7.32407 7.69190 7.91005 8.33796 8.60349 8.78402 8.90688 9.37638 10.81191 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.040235 B = 0.005727 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.752640 B = 4887.905428 C = 5243.901990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.246 3.754 10 H 0.067 0.933 11 N -0.852 5.852 12 C 0.206 3.794 13 C -0.169 4.169 14 C -0.036 4.036 15 C -0.275 4.275 16 C 0.518 3.482 17 F -0.181 7.181 18 F -0.179 7.179 19 F -0.181 7.181 20 C 0.149 3.851 21 N -0.470 5.470 22 H 0.267 0.733 23 H 0.315 0.685 24 H 0.363 0.637 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -10.925 1.856 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.137 4.137 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.136 3.864 10 H 0.085 0.915 11 N -0.383 5.383 12 C 0.069 3.931 13 C -0.189 4.189 14 C -0.061 4.061 15 C -0.279 4.279 16 C 0.463 3.537 17 F -0.162 7.162 18 F -0.161 7.161 19 F -0.163 7.163 20 C -0.010 4.010 21 N -0.178 5.178 22 H 0.077 0.923 23 H 0.124 0.876 24 H 0.181 0.819 25 H 0.173 0.827 26 H 0.154 0.846 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.977 -10.885 0.938 12.453 hybrid contribution 1.088 0.991 0.766 1.659 sum 7.065 -9.894 1.704 12.276 Atomic orbital electron populations 1.69716 1.05837 1.27453 1.50502 1.25000 0.95001 0.99467 0.94240 0.86416 0.79672 0.82513 0.78364 1.20392 1.21164 1.19914 1.21638 0.93758 0.90163 1.51712 0.92171 1.17951 0.88630 0.87497 0.92358 0.91512 1.59474 1.18525 1.56447 1.03833 1.22425 0.90676 0.93481 0.86495 1.22195 1.00305 0.94381 1.01988 1.21324 0.91855 0.97713 0.95236 1.20868 1.02440 0.99978 1.04581 1.18182 0.80254 0.81889 0.73340 1.93203 1.87042 1.60279 1.75676 1.93172 1.49472 1.88481 1.84947 1.93163 1.94631 1.90193 1.38286 1.22611 0.95551 0.87834 0.95005 1.67772 1.03356 1.21631 1.25050 0.92311 0.87606 0.81895 0.82682 0.84572 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 11.54 55.43 0.64 -23.13 15 2 C 0.07 1.71 5.38 -17.82 -0.10 1.61 15 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.53 -13.95 8.53 -34.44 -0.29 -14.24 15 8 H 0.06 1.63 7.68 -52.48 -0.40 1.23 15 9 C 0.25 5.87 3.19 -70.01 -0.22 5.64 15 10 H 0.07 1.78 8.14 -51.93 -0.42 1.35 15 11 N -0.85 -18.45 7.94 -6.65 -0.05 -18.50 15 12 C 0.21 4.33 6.11 -82.59 -0.50 3.82 15 13 C -0.17 -2.96 9.20 -39.45 -0.36 -3.32 15 14 C -0.04 -0.54 9.52 -39.28 -0.37 -0.92 15 15 C -0.27 -4.26 5.46 -104.48 -0.57 -4.83 15 16 C 0.52 7.12 3.38 36.01 0.12 7.24 15 17 F -0.18 -2.48 17.30 2.25 0.04 -2.44 15 18 F -0.18 -2.44 16.49 2.25 0.04 -2.41 15 19 F -0.18 -2.43 16.53 2.25 0.04 -2.39 15 20 C 0.15 2.55 10.56 -17.55 -0.19 2.37 15 21 N -0.47 -9.77 9.96 -9.48 -0.09 -9.86 15 22 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 23 H 0.31 6.42 8.26 -39.29 -0.32 6.09 15 24 H 0.36 8.54 7.08 -39.29 -0.28 8.26 15 25 H 0.16 2.53 6.64 -52.48 -0.35 2.18 15 26 H 0.14 1.66 7.69 -52.48 -0.40 1.26 15 27 H 0.16 2.24 7.61 -52.49 -0.40 1.84 15 LS Contribution 253.38 15.07 3.82 3.82 Total: -1.00 -26.36 253.38 -4.80 -31.16 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -1.71 Total: 10.70 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.49 Total: -2.62 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.49 Total: -51.49 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.24 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.36 -4.80 -31.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618654.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.331 kcal (2) G-P(sol) polarization free energy of solvation -26.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds