Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47187 * 270.00138 * 3 2 1 5 5 H 1.48505 * 109.46887 * 30.00112 * 3 2 1 6 6 H 1.48499 * 109.47414 * 149.99878 * 3 2 1 7 7 C 1.37874 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00107 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46840 * 59.99937 * 9 7 2 11 11 N 1.46905 * 109.47007 * 300.00314 * 9 7 2 12 12 C 1.50697 * 109.47293 * 180.02562 * 9 7 2 13 13 C 1.38215 * 119.62061 * 124.97808 * 12 9 7 14 14 C 1.38628 * 119.16579 * 180.02562 * 13 12 9 15 15 C 1.38677 * 118.41857 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.41881 * 179.97438 * 15 14 13 17 17 F 1.39895 * 109.47034 * 90.00262 * 16 15 14 18 18 F 1.39901 * 109.47030 * 210.00076 * 16 15 14 19 19 F 1.39897 * 109.46834 * 329.99910 * 16 15 14 20 20 C 1.38184 * 119.16194 * 0.02562 * 15 14 13 21 21 N 1.31854 * 119.61606 * 305.00333 * 12 9 7 22 22 H 0.96995 * 119.99760 * 359.97438 * 1 2 3 23 23 H 1.00895 * 110.99687 * 299.99732 * 11 9 7 24 24 H 1.00903 * 110.99797 * 63.95076 * 11 9 7 25 25 H 1.08005 * 120.42066 * 0.04901 * 13 12 9 26 26 H 1.08003 * 120.79538 * 180.02562 * 14 13 12 27 27 H 1.07999 * 119.61911 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.1508 -4.6114 0.9840 14 6 3.0568 -5.6607 0.9753 15 6 4.0137 -5.6980 -0.0277 16 6 5.0211 -6.8177 -0.0799 17 9 4.5123 -7.8670 -0.8527 18 9 6.2088 -6.3501 -0.6526 19 9 5.2772 -7.2753 1.2170 20 6 4.0326 -4.6950 -0.9781 21 7 3.1536 -3.7125 -0.9395 22 1 -0.4849 0.8400 0.0004 23 1 0.9653 -2.5260 2.0381 24 1 -0.3004 -1.8577 1.1911 25 1 1.3921 -4.5505 1.7502 26 1 3.0183 -6.4307 1.7316 27 1 4.7744 -4.7171 -1.7627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238618654.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = -137.500532 kcal Electronic energy + Delta-G solvation = -17438.492834 eV Core-core repulsion = 13973.327566 eV Total energy + Delta-G solvation = -3465.165268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.17345 -48.68514 -48.63488 -41.30965 -36.85907 -34.06716 -33.64249 -31.73017 -28.52118 -27.01194 -24.77432 -24.27724 -22.16202 -19.53224 -19.50233 -19.39148 -18.64591 -17.53295 -17.30454 -16.36228 -15.90264 -15.54970 -15.44960 -15.21282 -15.08553 -14.84870 -14.79545 -14.64716 -14.55132 -14.15585 -13.90033 -13.24839 -12.95234 -12.82571 -12.59156 -12.03240 -11.87383 -11.02739 -10.76916 -10.39332 -10.07293 -9.29649 -8.16730 -6.37645 -0.18552 0.27230 1.37669 1.40375 1.49309 1.61744 2.35353 2.65288 2.67582 2.99631 3.03491 3.41214 3.42588 3.76895 3.88876 4.13586 4.42366 4.61017 4.76827 4.95556 5.07448 5.39039 5.61408 5.64233 5.97590 6.56705 6.80219 7.01790 7.10858 7.36735 8.80837 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.040235 B = 0.005727 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.752640 B = 4887.905428 C = 5243.901990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.044 0.956 9 C 0.250 3.750 10 H 0.026 0.974 11 N -0.835 5.835 12 C 0.174 3.826 13 C -0.166 4.166 14 C -0.022 4.022 15 C -0.265 4.265 16 C 0.530 3.470 17 F -0.177 7.177 18 F -0.177 7.177 19 F -0.174 7.174 20 C 0.142 3.858 21 N -0.506 5.506 22 H 0.269 0.731 23 H 0.324 0.676 24 H 0.353 0.647 25 H 0.166 0.834 26 H 0.175 0.825 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 -12.053 2.702 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.062 0.938 9 C 0.139 3.861 10 H 0.044 0.956 11 N -0.365 5.365 12 C 0.038 3.962 13 C -0.186 4.186 14 C -0.047 4.047 15 C -0.269 4.269 16 C 0.475 3.525 17 F -0.159 7.159 18 F -0.158 7.158 19 F -0.156 7.156 20 C -0.017 4.017 21 N -0.215 5.215 22 H 0.079 0.921 23 H 0.134 0.866 24 H 0.169 0.831 25 H 0.183 0.817 26 H 0.192 0.808 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.106 -12.027 1.791 14.084 hybrid contribution 0.791 1.244 0.483 1.551 sum 7.897 -10.783 2.274 13.558 Atomic orbital electron populations 1.69801 1.06676 1.28130 1.50753 1.25656 0.95784 1.02129 0.94018 0.85539 0.78540 0.79298 0.78082 1.20569 1.20259 1.19969 1.21805 0.93138 0.91808 1.51932 0.93751 1.17653 0.88685 0.88331 0.91463 0.95623 1.59405 1.17893 1.55581 1.03607 1.22033 0.91351 0.94120 0.88659 1.22215 1.01076 0.94155 1.01155 1.21697 0.90235 0.97324 0.95444 1.21059 1.02418 0.99741 1.03673 1.17805 0.79782 0.81276 0.73632 1.93219 1.87037 1.59966 1.75639 1.93187 1.49206 1.88478 1.84930 1.93184 1.94539 1.90020 1.37826 1.22950 0.95214 0.87480 0.96099 1.67622 1.04374 1.23636 1.25845 0.92142 0.86642 0.83114 0.81681 0.80763 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.16 11.54 21.45 0.25 -48.91 15 2 C 0.02 1.30 5.38 84.65 0.46 1.75 15 3 Si 0.96 42.69 29.54 68.60 2.03 44.71 15 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 7 C -0.55 -29.30 8.53 25.60 0.22 -29.09 15 8 H 0.04 2.47 7.68 -2.91 -0.02 2.44 15 9 C 0.25 12.26 3.19 43.42 0.14 12.39 15 10 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 11 N -0.83 -36.62 7.94 -174.94 -1.39 -38.01 15 12 C 0.17 7.38 6.11 42.55 0.26 7.64 15 13 C -0.17 -5.59 9.20 22.36 0.21 -5.38 15 14 C -0.02 -0.59 9.52 22.47 0.21 -0.38 15 15 C -0.27 -7.50 5.46 -19.77 -0.11 -7.60 15 16 C 0.53 12.81 3.38 71.24 0.24 13.05 15 17 F -0.18 -4.29 17.30 44.97 0.78 -3.52 15 18 F -0.18 -4.29 16.49 44.97 0.74 -3.55 15 19 F -0.17 -4.00 16.53 44.97 0.74 -3.26 15 20 C 0.14 4.64 10.56 84.67 0.89 5.54 15 21 N -0.51 -21.12 9.96 -183.89 -1.83 -22.96 15 22 H 0.27 13.78 8.31 -92.71 -0.77 13.00 15 23 H 0.32 13.15 8.26 -89.70 -0.74 12.41 15 24 H 0.35 16.88 7.08 -89.69 -0.63 16.25 15 25 H 0.17 5.11 6.64 -2.91 -0.02 5.09 15 26 H 0.18 3.43 7.69 -2.91 -0.02 3.41 15 27 H 0.18 4.81 7.61 -2.91 -0.02 4.79 15 Total: -1.00 -56.78 253.38 3.70 -53.08 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.13 Total: 24.48 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 2.52 Total: -2.07 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -2.97 Total: -109.88 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 2.26 Total: -10.32 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -56.78 3.70 -53.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618654.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.419 kcal (2) G-P(sol) polarization free energy of solvation -56.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds