Wall clock time and date at job start Mon Mar 30 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00444 * 2 1 4 4 H 1.48497 * 109.47316 * 270.00368 * 3 2 1 5 5 H 1.48506 * 109.46692 * 30.00194 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99883 * 3 2 1 7 7 C 1.37877 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99956 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00237 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47031 * 59.99864 * 9 7 2 11 11 N 1.46905 * 109.47105 * 300.00333 * 9 7 2 12 12 C 1.50699 * 109.47296 * 180.02562 * 9 7 2 13 13 C 1.38662 * 120.42367 * 93.14671 * 12 9 7 14 14 C 1.38629 * 118.42567 * 179.97438 * 13 12 9 15 15 C 1.38230 * 119.15929 * 359.97438 * 14 13 12 16 16 N 1.31850 * 120.76127 * 359.72792 * 15 14 13 17 17 C 1.31888 * 121.72632 * 0.56768 * 16 15 14 18 18 C 1.50697 * 119.61465 * 179.71060 * 17 16 15 19 19 F 1.39908 * 109.47069 * 237.32014 * 18 17 16 20 20 F 1.39899 * 109.47664 * 357.31728 * 18 17 16 21 21 F 1.39898 * 109.47252 * 117.32652 * 18 17 16 22 22 H 0.97003 * 119.99384 * 0.02562 * 1 2 3 23 23 H 1.00909 * 110.99492 * 299.99871 * 11 9 7 24 24 H 1.00896 * 111.00601 * 63.94983 * 11 9 7 25 25 H 1.08006 * 120.78934 * 359.97438 * 13 12 9 26 26 H 1.08003 * 120.42092 * 179.97438 * 14 13 12 27 27 H 1.07996 * 119.61675 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8905 11 7 4.0016 -0.5008 -1.1987 12 6 4.0137 -2.6150 -0.0013 13 6 4.3101 -3.2538 -1.1958 14 6 4.7699 -4.5608 -1.1488 15 6 4.9170 -5.1792 0.0786 16 7 4.6310 -4.5388 1.1951 17 6 4.1861 -3.2972 1.1879 18 6 3.8677 -2.6128 2.4922 19 9 2.5347 -2.1879 2.4826 20 9 4.0640 -3.5082 3.5490 21 9 4.7084 -1.5066 2.6558 22 1 -0.4849 0.8401 -0.0004 23 1 3.6784 -0.9578 -2.0383 24 1 3.7323 0.4715 -1.1897 25 1 4.1857 -2.7452 -2.1405 26 1 5.0100 -5.0891 -2.0597 27 1 5.2751 -6.1971 0.1239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238622576.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:49 Heat of formation + Delta-G solvation = -102.846045 kcal Electronic energy + Delta-G solvation = -18550.408568 eV Core-core repulsion = 15086.746031 eV Total energy + Delta-G solvation = -3463.662537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.48320 -47.05458 -46.81757 -40.03256 -35.60016 -32.39928 -32.07845 -30.70029 -26.55773 -25.98220 -23.83634 -22.11654 -20.54520 -18.16295 -17.96223 -17.77767 -17.16853 -16.26224 -15.51611 -15.11508 -14.39010 -13.96058 -13.85006 -13.73806 -13.45918 -13.42775 -13.23241 -13.04826 -12.86341 -12.58941 -12.33990 -11.89994 -11.58926 -10.98170 -10.92967 -10.28714 -9.72053 -9.53596 -9.33509 -8.90858 -8.75808 -7.74059 -6.31281 -4.36128 1.13421 1.57794 3.06015 3.13888 3.22636 3.23805 3.87556 4.12072 4.15771 4.54025 4.88471 5.01864 5.07758 5.13019 5.22506 5.42172 5.55027 5.70471 5.95022 6.32467 6.38425 6.73542 6.91515 7.25748 7.84694 7.98542 8.07027 8.30014 8.72813 9.25491 10.80923 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.011268 C = 0.009246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.049669 B = 2484.269758 C = 3027.631642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.864 3.136 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.193 3.807 10 H 0.065 0.935 11 N -0.847 5.847 12 C -0.018 4.018 13 C -0.070 4.070 14 C -0.145 4.145 15 C 0.074 3.926 16 N -0.448 5.448 17 C 0.026 3.974 18 C 0.519 3.481 19 F -0.143 7.143 20 F -0.177 7.177 21 F -0.177 7.177 22 H 0.268 0.732 23 H 0.331 0.669 24 H 0.324 0.676 25 H 0.144 0.856 26 H 0.138 0.862 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -5.773 -1.216 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.084 3.916 10 H 0.083 0.917 11 N -0.381 5.381 12 C -0.020 4.020 13 C -0.097 4.097 14 C -0.165 4.165 15 C -0.085 4.085 16 N -0.156 5.156 17 C -0.113 4.113 18 C 0.464 3.536 19 F -0.124 7.124 20 F -0.158 7.158 21 F -0.159 7.159 22 H 0.078 0.922 23 H 0.144 0.856 24 H 0.140 0.860 25 H 0.162 0.838 26 H 0.155 0.845 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.441 -6.226 -0.078 11.309 hybrid contribution -0.912 1.546 -0.860 1.991 sum 8.528 -4.680 -0.938 9.773 Atomic orbital electron populations 1.69866 1.06120 1.27339 1.48436 1.24929 0.94814 0.98777 0.93886 0.87126 0.80748 0.84142 0.78728 1.19942 1.21313 1.18130 1.21352 0.88259 0.95293 1.53270 0.90333 1.18755 0.94691 0.86150 0.92042 0.91740 1.59735 1.66755 1.06065 1.05562 1.20795 0.90892 0.98371 0.91961 1.21425 0.95751 0.93788 0.98701 1.22270 0.99056 0.95675 0.99489 1.22535 0.99003 0.99799 0.87211 1.67106 1.08933 1.07181 1.32370 1.20711 1.04957 0.93031 0.92571 1.17885 0.75874 0.76424 0.83451 1.93413 1.32781 1.89862 1.96384 1.93157 1.94976 1.68022 1.59657 1.93157 1.71866 1.54977 1.95874 0.92163 0.85610 0.85957 0.83807 0.84463 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.96 55.43 0.77 -24.89 15 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 15 3 Si 0.86 20.26 24.61 -169.99 -4.18 16.07 15 4 H -0.27 -6.03 7.01 56.52 0.40 -5.63 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.26 -5.93 6.54 56.52 0.37 -5.56 15 7 C -0.54 -14.32 7.49 -34.44 -0.26 -14.58 15 8 H 0.08 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.19 4.41 1.80 -70.02 -0.13 4.28 15 10 H 0.07 1.57 4.84 -51.93 -0.25 1.32 15 11 N -0.85 -17.41 8.80 -6.65 -0.06 -17.47 15 12 C -0.02 -0.36 4.95 -104.49 -0.52 -0.88 15 13 C -0.07 -1.18 9.38 -39.28 -0.37 -1.54 15 14 C -0.15 -1.98 10.11 -39.44 -0.40 -2.38 15 15 C 0.07 1.07 11.18 -17.55 -0.20 0.88 15 16 N -0.45 -8.26 9.73 -9.47 -0.09 -8.35 15 17 C 0.03 0.53 6.26 -82.59 -0.52 0.01 15 18 C 0.52 10.87 2.81 36.00 0.10 10.97 15 19 F -0.14 -3.34 14.79 2.25 0.03 -3.31 15 20 F -0.18 -3.48 16.85 2.25 0.04 -3.44 15 21 F -0.18 -3.66 15.52 2.25 0.03 -3.62 15 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.33 6.19 7.25 -39.29 -0.28 5.90 15 24 H 0.32 6.87 4.29 -39.29 -0.17 6.70 15 25 H 0.14 2.14 6.44 -52.48 -0.34 1.81 15 26 H 0.14 1.31 8.06 -52.48 -0.42 0.89 15 27 H 0.16 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 239.61 15.07 3.61 3.61 Total: -1.00 -29.68 239.61 -3.70 -33.38 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -1.48 Total: 9.16 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.38 Total: -1.14 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.62 Total: -50.71 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 0.11 Total: -10.37 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.18 Total: 16.07 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.68 -3.70 -33.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622576.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.468 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds