Wall clock time and date at job start Mon Mar 30 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00444 * 2 1 4 4 H 1.48497 * 109.47316 * 270.00368 * 3 2 1 5 5 H 1.48506 * 109.46692 * 30.00194 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99883 * 3 2 1 7 7 C 1.37877 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99956 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00237 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47031 * 59.99864 * 9 7 2 11 11 N 1.46905 * 109.47105 * 300.00333 * 9 7 2 12 12 C 1.50699 * 109.47296 * 180.02562 * 9 7 2 13 13 C 1.38662 * 120.42367 * 93.14671 * 12 9 7 14 14 C 1.38629 * 118.42567 * 179.97438 * 13 12 9 15 15 C 1.38230 * 119.15929 * 359.97438 * 14 13 12 16 16 N 1.31850 * 120.76127 * 359.72792 * 15 14 13 17 17 C 1.31888 * 121.72632 * 0.56768 * 16 15 14 18 18 C 1.50697 * 119.61465 * 179.71060 * 17 16 15 19 19 F 1.39908 * 109.47069 * 237.32014 * 18 17 16 20 20 F 1.39899 * 109.47664 * 357.31728 * 18 17 16 21 21 F 1.39898 * 109.47252 * 117.32652 * 18 17 16 22 22 H 0.97003 * 119.99384 * 0.02562 * 1 2 3 23 23 H 1.00909 * 110.99492 * 299.99871 * 11 9 7 24 24 H 1.00896 * 111.00601 * 63.94983 * 11 9 7 25 25 H 1.08006 * 120.78934 * 359.97438 * 13 12 9 26 26 H 1.08003 * 120.42092 * 179.97438 * 14 13 12 27 27 H 1.07996 * 119.61675 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8905 11 7 4.0016 -0.5008 -1.1987 12 6 4.0137 -2.6150 -0.0013 13 6 4.3101 -3.2538 -1.1958 14 6 4.7699 -4.5608 -1.1488 15 6 4.9170 -5.1792 0.0786 16 7 4.6310 -4.5388 1.1951 17 6 4.1861 -3.2972 1.1879 18 6 3.8677 -2.6128 2.4922 19 9 2.5347 -2.1879 2.4826 20 9 4.0640 -3.5082 3.5490 21 9 4.7084 -1.5066 2.6558 22 1 -0.4849 0.8401 -0.0004 23 1 3.6784 -0.9578 -2.0383 24 1 3.7323 0.4715 -1.1897 25 1 4.1857 -2.7452 -2.1405 26 1 5.0100 -5.0891 -2.0597 27 1 5.2751 -6.1971 0.1239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238622576.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:49 Heat of formation + Delta-G solvation = -125.162822 kcal Electronic energy + Delta-G solvation = -18551.376296 eV Core-core repulsion = 15086.746031 eV Total energy + Delta-G solvation = -3464.630265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.13759 -48.67342 -48.53922 -41.36797 -37.29675 -34.22717 -33.50337 -32.22284 -28.39090 -27.48240 -25.43264 -23.56780 -22.16084 -19.71377 -19.53772 -19.45069 -19.11243 -17.84941 -16.93151 -16.62348 -16.05464 -15.60228 -15.44405 -15.37564 -15.08134 -14.91064 -14.87390 -14.75019 -14.57272 -14.26293 -13.73645 -13.58478 -13.30569 -12.81772 -12.68322 -12.00165 -11.66178 -10.92876 -10.80781 -10.66409 -10.21551 -9.48889 -8.40805 -6.48488 -0.18610 0.28103 1.19595 1.31697 1.38355 1.59592 2.18933 2.55416 2.60236 2.90763 3.03436 3.45059 3.52628 3.90523 3.94264 4.07394 4.20139 4.37557 4.51480 4.90736 5.11928 5.25464 5.29806 5.62161 5.96894 6.23893 6.50883 6.63565 6.71502 7.16177 8.75250 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.011268 C = 0.009246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.049669 B = 2484.269758 C = 3027.631642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.922 3.078 4 H -0.244 1.244 5 H -0.292 1.292 6 H -0.253 1.253 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.201 3.799 10 H 0.046 0.954 11 N -0.833 5.833 12 C -0.050 4.050 13 C -0.078 4.078 14 C -0.120 4.120 15 C 0.081 3.919 16 N -0.470 5.470 17 C 0.002 3.998 18 C 0.514 3.486 19 F -0.166 7.166 20 F -0.172 7.172 21 F -0.179 7.179 22 H 0.269 0.731 23 H 0.344 0.656 24 H 0.321 0.679 25 H 0.161 0.839 26 H 0.192 0.808 27 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.957 -6.851 -2.996 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.747 3.253 4 H -0.169 1.169 5 H -0.219 1.219 6 H -0.177 1.177 7 C -0.572 4.572 8 H 0.053 0.947 9 C 0.091 3.909 10 H 0.064 0.936 11 N -0.367 5.367 12 C -0.053 4.053 13 C -0.104 4.104 14 C -0.138 4.138 15 C -0.079 4.079 16 N -0.178 5.178 17 C -0.135 4.135 18 C 0.459 3.541 19 F -0.148 7.148 20 F -0.154 7.154 21 F -0.161 7.161 22 H 0.078 0.922 23 H 0.157 0.843 24 H 0.137 0.863 25 H 0.178 0.822 26 H 0.209 0.791 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 11.628 -7.309 -1.872 13.861 hybrid contribution -1.546 1.671 -0.325 2.299 sum 10.082 -5.638 -2.197 11.759 Atomic orbital electron populations 1.70013 1.07938 1.28264 1.50763 1.25723 0.95462 1.02445 0.93761 0.86191 0.79253 0.79616 0.80203 1.16904 1.21921 1.17746 1.21467 0.90481 0.93393 1.51833 0.94663 1.18447 0.92017 0.88350 0.92123 0.93645 1.59654 1.66031 1.05754 1.05307 1.20684 0.93483 0.97412 0.93671 1.21761 0.95478 0.95319 0.97853 1.22817 0.95696 0.94075 1.01261 1.23470 0.96597 1.01270 0.86520 1.67139 1.09811 1.06372 1.34511 1.20540 1.07045 0.94172 0.91725 1.18134 0.74901 0.76562 0.84518 1.93356 1.34610 1.90218 1.96574 1.93149 1.94853 1.67735 1.59616 1.93138 1.71697 1.55252 1.95981 0.92156 0.84251 0.86277 0.82182 0.79085 0.77707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.96 21.45 0.30 -55.68 15 2 C 0.03 1.46 5.47 84.66 0.46 1.92 15 3 Si 0.92 41.92 24.61 68.60 1.69 43.61 15 4 H -0.24 -9.92 7.01 99.48 0.70 -9.23 15 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 15 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 15 7 C -0.53 -28.85 7.49 25.60 0.19 -28.66 15 8 H 0.04 2.17 7.98 -2.91 -0.02 2.14 15 9 C 0.20 9.17 1.80 43.42 0.08 9.25 15 10 H 0.05 2.24 4.84 -2.39 -0.01 2.23 15 11 N -0.83 -32.87 8.80 -174.95 -1.54 -34.41 15 12 C -0.05 -1.98 4.95 -19.78 -0.10 -2.08 15 13 C -0.08 -2.38 9.38 22.46 0.21 -2.17 15 14 C -0.12 -2.65 10.11 22.36 0.23 -2.43 15 15 C 0.08 2.00 11.18 84.69 0.95 2.95 15 16 N -0.47 -16.42 9.73 -183.89 -1.79 -18.21 15 17 C 0.00 0.08 6.26 42.54 0.27 0.34 15 18 C 0.51 22.04 2.81 71.23 0.20 22.24 15 19 F -0.17 -8.14 14.79 44.97 0.67 -7.47 15 20 F -0.17 -6.88 16.85 44.97 0.76 -6.12 15 21 F -0.18 -7.56 15.52 44.97 0.70 -6.86 15 22 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 23 H 0.34 12.11 7.25 -89.69 -0.65 11.46 15 24 H 0.32 12.96 4.29 -89.70 -0.39 12.57 15 25 H 0.16 4.23 6.44 -2.91 -0.02 4.21 15 26 H 0.19 2.23 8.06 -2.91 -0.02 2.20 15 27 H 0.21 3.06 8.06 -2.91 -0.02 3.04 15 Total: -1.00 -67.55 239.61 3.41 -64.14 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.15 Total: 19.64 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 2.49 Total: 1.36 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.03 Total: -108.30 kcal Atomic # 9 Polarization: -22.57 SS G_CDS: 2.12 Total: -20.45 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.69 Total: 43.61 kcal Total: -67.55 3.41 -64.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622576.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.026 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds