Wall clock time and date at job start Mon Mar 30 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99844 * 2 1 4 4 H 1.48504 * 109.47485 * 269.99955 * 3 2 1 5 5 H 1.48498 * 109.47429 * 30.00380 * 3 2 1 6 6 H 1.48505 * 109.46984 * 149.99937 * 3 2 1 7 7 C 1.37880 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99819 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.46937 * 60.00026 * 9 7 2 11 11 N 1.46893 * 109.46995 * 300.00039 * 9 7 2 12 12 C 1.50698 * 109.46996 * 180.02562 * 9 7 2 13 13 C 1.38672 * 120.79263 * 100.02009 * 12 9 7 14 14 C 1.38175 * 119.16394 * 179.97438 * 13 12 9 15 15 N 1.31878 * 120.76967 * 0.02562 * 14 13 12 16 16 C 1.31862 * 121.72355 * 359.68917 * 15 14 13 17 17 C 1.38223 * 120.75936 * 0.57619 * 16 15 14 18 18 C 1.50703 * 120.41754 * 179.73166 * 17 16 15 19 19 F 1.39905 * 109.47157 * 359.72171 * 18 17 16 20 20 F 1.39900 * 109.47159 * 239.72471 * 18 17 16 21 21 F 1.39897 * 109.47274 * 119.72163 * 18 17 16 22 22 H 0.96999 * 120.00495 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00375 * 176.04696 * 11 9 7 24 24 H 1.00903 * 111.00208 * 299.99753 * 11 9 7 25 25 H 1.08004 * 120.41506 * 359.97438 * 13 12 9 26 26 H 1.08006 * 119.61786 * 180.02562 * 14 13 12 27 27 H 1.07998 * 119.61726 * 180.28850 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4060 -2.5778 1.1973 12 6 2.2303 -3.6446 -0.0015 13 6 2.5332 -4.3194 1.1715 14 6 3.4356 -5.3651 1.1330 15 7 4.0061 -5.7224 -0.0010 16 6 3.7379 -5.1073 -1.1361 17 6 2.8497 -4.0490 -1.1739 18 6 2.5534 -3.3476 -2.4745 19 9 3.2972 -3.9372 -3.5023 20 9 2.8989 -1.9964 -2.3649 21 9 1.1891 -3.4581 -2.7637 22 1 -0.4851 0.8400 -0.0004 23 1 -0.1579 -3.4144 1.1881 24 1 0.9637 -2.5269 2.0367 25 1 2.0696 -4.0312 2.1035 26 1 3.6765 -5.8960 2.0422 27 1 4.2214 -5.4312 -2.0459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238622824.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:08 Heat of formation + Delta-G solvation = -108.802012 kcal Electronic energy + Delta-G solvation = -18496.269753 eV Core-core repulsion = 15032.348946 eV Total energy + Delta-G solvation = -3463.920807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.50697 -47.11847 -46.77160 -39.98933 -35.37737 -32.27518 -31.84613 -30.20752 -26.48142 -25.72607 -23.80016 -22.03377 -20.65736 -17.98005 -17.75170 -17.69004 -16.65925 -16.12907 -15.75362 -14.66230 -14.39773 -14.12773 -13.87114 -13.72329 -13.50378 -13.39357 -13.03701 -12.99998 -12.78048 -12.63437 -12.30669 -11.62160 -11.04077 -10.87702 -10.79020 -10.13543 -9.72982 -9.29237 -9.10031 -8.81633 -8.48541 -7.37388 -5.97715 -4.12788 1.10947 1.58493 3.26362 3.30965 3.37533 3.40191 3.90861 4.26713 4.43072 4.62832 4.66573 5.04756 5.09727 5.26048 5.29839 5.44640 5.70753 5.86114 6.04818 6.37060 6.42515 6.84415 7.18484 7.78499 7.95723 8.06229 8.40599 8.77702 8.96847 9.55435 11.06962 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.010759 C = 0.008938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.189213 B = 2601.915985 C = 3132.033399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.088 3.912 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.238 3.762 10 H 0.068 0.932 11 N -0.805 5.805 12 C 0.018 3.982 13 C -0.190 4.190 14 C 0.118 3.882 15 N -0.504 5.504 16 C 0.141 3.859 17 C -0.240 4.240 18 C 0.516 3.484 19 F -0.193 7.193 20 F -0.148 7.148 21 F -0.176 7.176 22 H 0.258 0.742 23 H 0.301 0.699 24 H 0.321 0.679 25 H 0.139 0.861 26 H 0.156 0.844 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -8.277 -0.798 9.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.120 4.120 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.127 3.873 10 H 0.086 0.914 11 N -0.332 5.332 12 C 0.007 3.993 13 C -0.210 4.210 14 C -0.037 4.037 15 N -0.214 5.214 16 C -0.017 4.017 17 C -0.244 4.244 18 C 0.461 3.539 19 F -0.174 7.174 20 F -0.129 7.129 21 F -0.158 7.158 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.134 0.866 25 H 0.156 0.844 26 H 0.173 0.827 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.350 -8.145 -1.062 9.294 hybrid contribution 0.414 0.851 0.072 0.949 sum 4.764 -7.294 -0.990 8.768 Atomic orbital electron populations 1.70087 1.05689 1.26040 1.45920 1.24866 0.94646 0.98580 0.93861 0.86695 0.79933 0.83672 0.78248 1.20493 1.21166 1.19947 1.20602 0.92107 0.88446 1.55326 0.92561 1.18673 0.87675 0.88469 0.92442 0.91422 1.59090 1.27720 1.42270 1.04093 1.22318 0.92844 0.93689 0.90422 1.22008 1.01534 0.98135 0.99287 1.22843 0.91332 0.93455 0.96034 1.67792 1.25285 1.29694 0.98597 1.22566 0.92282 0.90020 0.96849 1.20942 1.06544 1.02521 0.94395 1.18012 0.74232 0.78318 0.83365 1.93097 1.77260 1.84363 1.62701 1.93370 1.91565 1.32130 1.95800 1.93169 1.32490 1.95958 1.94148 0.93206 0.88763 0.86593 0.84370 0.82701 0.82260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.77 12.77 55.43 0.71 -23.06 15 2 C 0.09 2.38 5.39 -17.82 -0.10 2.28 15 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 7 C -0.53 -13.71 6.52 -34.44 -0.22 -13.94 15 8 H 0.06 1.50 7.59 -52.49 -0.40 1.10 15 9 C 0.24 5.53 2.29 -70.02 -0.16 5.37 15 10 H 0.07 1.76 6.12 -51.93 -0.32 1.45 15 11 N -0.81 -17.47 8.04 -6.66 -0.05 -17.53 15 12 C 0.02 0.35 5.02 -104.32 -0.52 -0.17 15 13 C -0.19 -3.15 9.32 -39.44 -0.37 -3.52 15 14 C 0.12 1.77 11.18 -17.55 -0.20 1.57 15 15 N -0.50 -8.26 10.36 -13.25 -0.14 -8.40 15 16 C 0.14 2.33 10.60 -17.54 -0.19 2.15 15 17 C -0.24 -4.52 5.38 -104.48 -0.56 -5.09 15 18 C 0.52 10.03 2.88 36.01 0.10 10.13 15 19 F -0.19 -3.26 16.00 2.25 0.04 -3.23 15 20 F -0.15 -3.27 14.59 2.25 0.03 -3.24 15 21 F -0.18 -3.59 15.48 2.25 0.03 -3.56 15 22 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 23 H 0.30 5.78 9.06 -39.29 -0.36 5.42 15 24 H 0.32 6.46 7.36 -39.29 -0.29 6.18 15 25 H 0.14 2.05 6.39 -52.48 -0.34 1.71 15 26 H 0.16 1.73 8.06 -52.48 -0.42 1.31 15 27 H 0.16 2.24 7.17 -52.49 -0.38 1.86 15 LS Contribution 246.74 15.07 3.72 3.72 Total: -1.00 -28.88 246.74 -4.53 -33.40 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -1.63 Total: 7.04 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.21 Total: -1.21 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.52 Total: -48.98 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.10 Total: -10.02 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.88 -4.53 -33.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622824.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.398 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds