Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00402 * 2 1 4 4 H 1.48498 * 109.47420 * 240.00216 * 3 2 1 5 5 H 1.48503 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47539 * 119.99909 * 3 2 1 7 7 C 1.37875 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00221 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47060 * 60.00267 * 9 7 2 11 11 N 1.46901 * 109.46921 * 300.00086 * 9 7 2 12 12 C 1.50699 * 109.47269 * 180.02562 * 9 7 2 13 13 C 1.38227 * 120.41852 * 100.00009 * 12 9 7 14 14 N 1.31855 * 120.76494 * 180.02562 * 13 12 9 15 15 C 1.31892 * 121.72293 * 359.97241 * 14 13 12 16 16 C 1.38182 * 120.76545 * 359.97438 * 15 14 13 17 17 C 1.38625 * 120.42125 * 279.72607 * 12 9 7 18 18 C 1.50700 * 120.78913 * 359.97438 * 17 12 9 19 19 F 1.39898 * 109.47341 * 179.97438 * 18 17 12 20 20 F 1.39904 * 109.47014 * 300.00136 * 18 17 12 21 21 F 1.39899 * 109.47384 * 60.00013 * 18 17 12 22 22 H 0.96997 * 119.99545 * 359.97438 * 1 2 3 23 23 H 1.00898 * 111.00245 * 299.99784 * 11 9 7 24 24 H 1.00904 * 111.00313 * 63.95601 * 11 9 7 25 25 H 1.07997 * 119.61938 * 0.02562 * 13 12 9 26 26 H 1.07999 * 119.61283 * 180.02562 * 15 14 13 27 27 H 1.07998 * 120.41800 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1992 12 6 2.2302 -3.6447 -0.0005 13 6 2.5276 -4.3111 1.1734 14 7 3.3837 -5.3139 1.1813 15 6 3.9862 -5.7201 0.0806 16 6 3.7377 -5.1026 -1.1303 17 6 2.8398 -4.0470 -1.1787 18 6 2.5373 -3.3507 -2.4806 19 9 3.2771 -3.9436 -3.5094 20 9 1.1717 -3.4628 -2.7631 21 9 2.8828 -1.9990 -2.3778 22 1 -0.4849 0.8401 0.0004 23 1 0.9651 -2.5260 2.0381 24 1 -0.3005 -1.8577 1.1911 25 1 2.0533 -4.0070 2.0947 26 1 4.6812 -6.5455 0.1262 27 1 4.2340 -5.4400 -2.0282 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238624058.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = -133.623887 kcal Electronic energy + Delta-G solvation = -18499.596098 eV Core-core repulsion = 15034.598933 eV Total energy + Delta-G solvation = -3464.997164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.11113 -48.67090 -48.47824 -41.27083 -36.97694 -34.28122 -33.58059 -31.21202 -28.19726 -27.52968 -25.37968 -23.47309 -22.21975 -19.54612 -19.51358 -19.37211 -18.67632 -17.36430 -16.87851 -16.39608 -15.92880 -15.75071 -15.47183 -15.19741 -15.06303 -14.95382 -14.76605 -14.70092 -14.52390 -14.14308 -13.28733 -13.15939 -13.11403 -12.82116 -12.61194 -12.06425 -11.89825 -11.07055 -10.76764 -10.47247 -9.90785 -9.27498 -8.15806 -6.37090 -0.12476 0.17962 1.36863 1.39172 1.45817 1.68833 2.35214 2.70019 2.73931 3.04524 3.11343 3.48869 3.53263 3.83733 3.99048 4.10794 4.47804 4.63203 4.70655 4.84020 5.03063 5.52656 5.62145 5.64743 5.94994 6.56908 6.81069 6.92768 7.06411 7.36198 8.81012 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.010795 C = 0.008942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.641719 B = 2593.245830 C = 3130.585874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.046 0.954 9 C 0.233 3.767 10 H 0.032 0.968 11 N -0.841 5.841 12 C -0.059 4.059 13 C 0.097 3.903 14 N -0.475 5.475 15 C 0.081 3.919 16 C -0.120 4.120 17 C -0.162 4.162 18 C 0.509 3.491 19 F -0.174 7.174 20 F -0.184 7.184 21 F -0.168 7.168 22 H 0.268 0.732 23 H 0.322 0.678 24 H 0.351 0.649 25 H 0.168 0.832 26 H 0.206 0.794 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.842 -8.273 -2.300 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.065 0.935 9 C 0.122 3.878 10 H 0.050 0.950 11 N -0.371 5.371 12 C -0.062 4.062 13 C -0.059 4.059 14 N -0.183 5.183 15 C -0.076 4.076 16 C -0.140 4.140 17 C -0.172 4.172 18 C 0.455 3.545 19 F -0.155 7.155 20 F -0.166 7.166 21 F -0.150 7.150 22 H 0.078 0.922 23 H 0.133 0.867 24 H 0.167 0.833 25 H 0.185 0.815 26 H 0.222 0.778 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.626 -9.285 -1.819 11.551 hybrid contribution 0.198 2.761 -1.004 2.945 sum 6.824 -6.524 -2.824 9.854 Atomic orbital electron populations 1.69807 1.06734 1.28075 1.50588 1.25575 0.95624 1.01907 0.94050 0.85733 0.78573 0.79458 0.78668 1.20426 1.20621 1.19512 1.21712 0.92978 0.91440 1.52096 0.93538 1.17981 0.89175 0.88423 0.92186 0.95040 1.59498 1.18019 1.55694 1.03847 1.21180 0.95834 0.95918 0.93231 1.22666 0.94251 0.91312 0.97705 1.67735 1.06467 1.12249 1.31847 1.23389 0.98173 0.99669 0.86388 1.22296 0.95799 0.93524 1.02361 1.20415 1.03632 1.00746 0.92366 1.18240 0.74071 0.77600 0.84581 1.93125 1.76848 1.83700 1.61855 1.93158 1.33158 1.95894 1.94376 1.93313 1.91717 1.33854 1.96077 0.92234 0.86726 0.83338 0.81487 0.77772 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.46 11.54 21.45 0.25 -49.22 15 2 C 0.03 1.54 5.38 84.65 0.46 1.99 15 3 Si 0.95 42.57 29.54 68.60 2.03 44.60 15 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 7 C -0.54 -28.22 6.53 25.60 0.17 -28.05 15 8 H 0.05 2.47 7.61 -2.91 -0.02 2.45 15 9 C 0.23 11.29 2.39 43.42 0.10 11.40 15 10 H 0.03 1.73 6.10 -2.39 -0.01 1.72 15 11 N -0.84 -38.27 8.67 -174.95 -1.52 -39.79 15 12 C -0.06 -2.44 5.02 -19.77 -0.10 -2.54 15 13 C 0.10 3.61 10.42 84.69 0.88 4.49 15 14 N -0.47 -15.40 10.36 -195.84 -2.03 -17.43 15 15 C 0.08 2.09 11.18 84.67 0.95 3.03 15 16 C -0.12 -3.35 9.50 22.36 0.21 -3.14 15 17 C -0.16 -6.00 5.40 -19.67 -0.11 -6.11 15 18 C 0.51 19.78 2.88 71.24 0.21 19.99 15 19 F -0.17 -5.61 16.08 44.97 0.72 -4.89 15 20 F -0.18 -7.76 15.48 44.97 0.70 -7.07 15 21 F -0.17 -7.54 14.63 44.97 0.66 -6.88 15 22 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 23 H 0.32 13.50 7.31 -89.70 -0.66 12.84 15 24 H 0.35 17.36 7.08 -89.69 -0.63 16.72 15 25 H 0.17 5.93 6.26 -2.91 -0.02 5.91 15 26 H 0.21 3.26 8.06 -2.91 -0.02 3.24 15 27 H 0.18 3.58 7.27 -2.91 -0.02 3.56 15 Total: -1.00 -58.06 244.33 3.53 -54.53 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.04 Total: 25.08 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 2.77 Total: 1.06 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.30 Total: -106.43 kcal Atomic # 9 Polarization: -20.92 SS G_CDS: 2.08 Total: -18.84 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -58.06 3.53 -54.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624058.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.095 kcal (2) G-P(sol) polarization free energy of solvation -58.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds