Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48498 * 109.47091 * 269.99692 * 3 2 1 5 5 H 1.48498 * 109.46997 * 29.99502 * 3 2 1 6 6 H 1.48501 * 109.47418 * 149.99631 * 3 2 1 7 7 C 1.37882 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99869 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47113 * 59.99852 * 9 7 2 11 11 N 1.46906 * 109.47109 * 299.99966 * 9 7 2 12 12 C 1.50699 * 109.47227 * 179.97438 * 9 7 2 13 13 N 1.31878 * 119.61461 * 74.73001 * 12 9 7 14 14 C 1.31862 * 121.72000 * 179.71370 * 13 12 9 15 15 C 1.38220 * 120.76464 * 0.55947 * 14 13 12 16 16 C 1.38631 * 119.16183 * 359.72796 * 15 14 13 17 17 C 1.38190 * 119.61623 * 254.99961 * 12 9 7 18 18 C 1.50699 * 120.41637 * 0.02562 * 17 12 9 19 19 F 1.39899 * 109.46770 * 179.97438 * 18 17 12 20 20 F 1.39892 * 109.47183 * 299.99889 * 18 17 12 21 21 F 1.39906 * 109.47117 * 59.99970 * 18 17 12 22 22 H 0.97001 * 119.99949 * 0.02562 * 1 2 3 23 23 H 1.00900 * 110.99554 * 176.04571 * 11 9 7 24 24 H 1.00900 * 110.99744 * 300.00048 * 11 9 7 25 25 H 1.08008 * 119.61583 * 180.30862 * 14 13 12 26 26 H 1.08008 * 120.41938 * 179.70593 * 15 14 13 27 27 H 1.07999 * 120.78712 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 7 0.4060 -2.5767 1.1997 12 6 2.2302 -3.6447 0.0005 13 7 2.8832 -3.9438 1.1066 14 6 3.7451 -4.9406 1.1548 15 6 4.0042 -5.7061 0.0334 16 6 3.3409 -5.4179 -1.1493 17 6 2.4377 -4.3658 -1.1599 18 6 1.6921 -4.0128 -2.4211 19 9 2.0746 -4.8828 -3.4477 20 9 0.3161 -4.1305 -2.1978 21 9 1.9941 -2.6971 -2.7886 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1580 -3.4134 1.1911 24 1 0.9637 -2.5251 2.0390 25 1 4.2575 -5.1589 2.0802 26 1 4.7148 -6.5183 0.0780 27 1 3.5236 -5.9987 -2.0412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238625306.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -109.076363 kcal Electronic energy + Delta-G solvation = -18402.692346 eV Core-core repulsion = 14938.759642 eV Total energy + Delta-G solvation = -3463.932704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.67023 -47.25465 -46.95221 -39.96922 -34.71847 -32.69608 -31.81021 -30.20940 -26.27805 -25.75790 -23.78828 -22.13189 -20.62716 -18.13211 -17.89964 -17.88964 -16.47101 -16.17449 -15.62239 -14.55507 -14.17003 -14.06175 -13.94884 -13.81658 -13.55075 -13.48397 -13.23204 -13.16990 -12.81770 -12.57988 -12.28514 -11.51477 -11.10473 -10.77839 -10.72569 -10.03111 -9.76437 -9.37354 -9.18952 -8.60558 -8.39449 -7.14523 -5.87176 -4.01443 1.12336 1.48787 3.13913 3.36864 3.42938 3.46245 3.95155 4.16745 4.50144 4.50805 4.78781 4.94296 4.96500 5.09509 5.32793 5.40495 5.58595 5.99305 6.14076 6.26363 6.35891 6.86816 7.22797 7.89870 8.07149 8.32010 8.61926 9.01668 9.10216 9.65427 11.17755 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.010167 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.343265 B = 2753.266427 C = 3233.040756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.086 3.914 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.253 3.747 10 H 0.065 0.935 11 N -0.798 5.798 12 C 0.187 3.813 13 N -0.475 5.475 14 C 0.126 3.874 15 C -0.207 4.207 16 C -0.032 4.032 17 C -0.249 4.249 18 C 0.516 3.484 19 F -0.190 7.190 20 F -0.173 7.173 21 F -0.156 7.156 22 H 0.257 0.743 23 H 0.296 0.704 24 H 0.330 0.670 25 H 0.156 0.844 26 H 0.136 0.864 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -11.267 -2.217 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.121 4.121 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.071 0.929 9 C 0.142 3.858 10 H 0.082 0.918 11 N -0.323 5.323 12 C 0.047 3.953 13 N -0.184 5.184 14 C -0.032 4.032 15 C -0.227 4.227 16 C -0.058 4.058 17 C -0.253 4.253 18 C 0.461 3.539 19 F -0.172 7.172 20 F -0.154 7.154 21 F -0.137 7.137 22 H 0.067 0.933 23 H 0.106 0.894 24 H 0.143 0.857 25 H 0.173 0.827 26 H 0.154 0.846 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.828 -9.937 -1.746 11.185 hybrid contribution 1.267 -0.565 -0.766 1.585 sum 6.095 -10.501 -2.512 12.399 Atomic orbital electron populations 1.70095 1.05630 1.25879 1.46275 1.24879 0.94680 0.98499 0.94053 0.86688 0.79967 0.83762 0.78028 1.20671 1.21137 1.20006 1.20560 0.91997 0.88683 1.54837 0.92930 1.18685 0.86723 0.87761 0.92648 0.91800 1.59174 1.27324 1.41251 1.04544 1.23711 0.92293 0.93467 0.85785 1.67802 1.07182 1.15181 1.28186 1.23079 0.92658 0.89545 0.97923 1.21951 1.03500 1.03423 0.93870 1.21363 0.91938 0.93689 0.98853 1.21020 1.05278 1.03243 0.95744 1.17997 0.77514 0.75151 0.83191 1.93101 1.91163 1.70330 1.62572 1.93190 1.32059 1.95625 1.94550 1.93321 1.92732 1.35383 1.92278 0.93289 0.89433 0.85670 0.82687 0.84633 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.69 12.77 55.43 0.71 -23.99 15 2 C 0.09 2.43 5.39 -17.82 -0.10 2.33 15 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.52 -14.49 8.70 -34.44 -0.30 -14.79 15 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.25 6.33 2.20 -70.01 -0.15 6.18 15 10 H 0.06 1.72 4.92 -51.93 -0.26 1.46 15 11 N -0.80 -19.34 8.49 -6.64 -0.06 -19.40 15 12 C 0.19 4.01 5.62 -82.59 -0.46 3.55 15 13 N -0.48 -9.38 9.71 -9.47 -0.09 -9.47 15 14 C 0.13 1.91 11.18 -17.55 -0.20 1.71 15 15 C -0.21 -2.74 10.11 -39.44 -0.40 -3.14 15 16 C -0.03 -0.48 9.54 -39.28 -0.37 -0.86 15 17 C -0.25 -4.70 5.38 -104.48 -0.56 -5.26 15 18 C 0.52 9.91 2.79 36.01 0.10 10.01 15 19 F -0.19 -3.13 16.05 2.25 0.04 -3.09 15 20 F -0.17 -3.47 15.53 2.25 0.03 -3.43 15 21 F -0.16 -3.40 16.16 2.25 0.04 -3.36 15 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 23 H 0.30 6.47 9.06 -39.29 -0.36 6.12 15 24 H 0.33 7.86 8.54 -39.29 -0.34 7.52 15 25 H 0.16 1.76 8.06 -52.48 -0.42 1.34 15 26 H 0.14 1.26 8.06 -52.48 -0.42 0.84 15 27 H 0.14 1.69 7.26 -52.49 -0.38 1.30 15 LS Contribution 252.44 15.07 3.80 3.80 Total: -1.00 -30.49 252.44 -4.71 -35.20 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -1.71 Total: 7.35 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.45 Total: -0.28 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.56 Total: -52.86 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 0.11 Total: -9.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.49 -4.71 -35.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238625306.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.877 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds