Wall clock time and date at job start Mon Mar 30 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36051 * 116.99999 * 2 1 4 4 C 1.38753 * 119.91494 * 359.97438 * 3 2 1 5 5 C 1.38790 * 120.55477 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.80413 * 180.02562 * 5 4 3 7 7 C 1.37862 * 120.38783 * 359.71199 * 5 4 3 8 8 F 1.35105 * 120.08667 * 180.28471 * 7 5 4 9 9 C 1.41001 * 119.82104 * 0.56337 * 7 5 4 10 10 C 1.41110 * 120.26925 * 179.72272 * 9 7 5 11 11 H 1.07998 * 119.99809 * 145.34766 * 10 9 7 12 12 C 1.39905 * 119.99730 * 325.33392 * 10 9 7 13 13 N 1.30902 * 119.99654 * 149.40196 * 12 10 9 14 14 Si 1.86801 * 120.00288 * 329.12367 * 12 10 9 15 15 H 1.48503 * 109.47197 * 270.27663 * 14 12 10 16 16 H 1.48499 * 109.46659 * 30.27594 * 14 12 10 17 17 H 1.48506 * 109.46953 * 150.27514 * 14 12 10 18 18 C 1.38695 * 119.91382 * 179.97438 * 3 2 1 19 19 O 1.35784 * 120.19919 * 0.02562 * 18 3 2 20 20 H 1.09002 * 109.47436 * 300.00246 * 1 2 3 21 21 H 1.08996 * 109.47091 * 60.00093 * 1 2 3 22 22 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.72554 * 359.97438 * 4 3 2 24 24 H 0.96996 * 120.00127 * 354.59503 * 13 12 10 25 25 H 0.96697 * 113.99703 * 269.97353 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2892 2.3748 -0.0005 5 6 1.9055 3.6184 -0.0011 6 17 0.9388 5.0604 -0.0011 7 6 3.2807 3.7152 0.0049 8 9 3.8742 4.9289 0.0101 9 6 4.0661 2.5442 -0.0004 10 6 5.4744 2.6324 -0.0003 11 1 6.0615 1.8958 0.5281 12 6 6.1102 3.6737 -0.6850 13 7 7.2557 4.1374 -0.2534 14 14 5.3282 4.3972 -2.2194 15 1 5.7978 3.6499 -3.4137 16 1 3.8504 4.2912 -2.1187 17 1 5.7147 5.8255 -2.3456 18 6 3.4318 1.2827 0.0005 19 8 4.1736 0.1454 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.2111 2.3115 -0.0014 24 1 7.6256 3.8143 0.5830 25 1 4.3884 -0.1840 0.8839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258137334.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:31 Heat of formation + Delta-G solvation = -115.216633 kcal Electronic energy + Delta-G solvation = -15975.445711 eV Core-core repulsion = 12894.917579 eV Total energy + Delta-G solvation = -3080.528131 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.80068 -39.34813 -37.02488 -36.19566 -34.90154 -33.76550 -30.10399 -28.59743 -26.61630 -25.02872 -21.48916 -21.00309 -18.86622 -17.61188 -16.88292 -16.34137 -15.73578 -15.21636 -15.04017 -14.36654 -13.84754 -13.65597 -13.30270 -12.83096 -12.69472 -12.42778 -12.02118 -11.62676 -11.21374 -10.97752 -10.78778 -10.48082 -10.10810 -9.79326 -9.74327 -9.61937 -9.07779 -7.94460 -7.56675 -7.18951 -4.80405 2.00283 2.23249 2.77033 3.25225 3.28610 3.48095 3.84378 3.96579 4.15213 4.75625 5.15347 5.38879 5.46949 5.55461 5.68230 5.91977 6.11019 6.60117 6.71957 6.82725 7.15968 7.23455 7.31251 7.88750 7.95361 8.04350 8.36158 8.78604 9.69301 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.012358 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.111434 B = 2265.118212 C = 3216.388806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.141 3.859 4 C -0.300 4.300 5 C 0.012 3.988 6 Cl -0.091 7.091 7 C -0.023 4.023 8 F -0.136 7.136 9 C 0.075 3.925 10 C -0.486 4.486 11 H 0.094 0.906 12 C 0.055 3.945 13 N -0.774 5.774 14 Si 1.070 2.930 15 H -0.289 1.289 16 H -0.260 1.260 17 H -0.274 1.274 18 C -0.022 4.022 19 O -0.471 6.471 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.090 0.910 23 H 0.123 0.877 24 H 0.293 0.707 25 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 -2.529 0.832 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.096 3.904 4 C -0.321 4.321 5 C -0.015 4.015 6 Cl -0.063 7.063 7 C -0.044 4.044 8 F -0.115 7.115 9 C 0.070 3.930 10 C -0.511 4.511 11 H 0.111 0.889 12 C -0.170 4.170 13 N -0.392 5.392 14 Si 0.894 3.106 15 H -0.217 1.217 16 H -0.185 1.185 17 H -0.199 1.199 18 C -0.068 4.068 19 O -0.277 6.277 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.108 0.892 23 H 0.141 0.859 24 H 0.104 0.896 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.321 -1.385 -0.921 8.486 hybrid contribution -0.364 -0.716 1.963 2.121 sum -8.685 -2.101 1.042 8.996 Atomic orbital electron populations 1.22917 0.79941 1.02669 1.01060 1.86113 1.20116 1.27212 1.89237 1.19007 0.91166 0.83292 0.96953 1.19909 0.98678 0.89336 1.24129 1.20325 0.89084 0.87006 1.05131 1.98291 1.71839 1.39038 1.97119 1.17011 0.87903 0.80851 1.18629 1.91110 1.83690 1.41860 1.94806 1.17563 0.94116 0.88414 0.92918 1.20385 0.90883 1.10980 1.28876 0.88863 1.27505 0.94413 0.91995 1.03115 1.70568 1.16874 1.32060 1.19740 0.83636 0.77890 0.76691 0.72368 1.21701 1.18508 1.19868 1.17507 0.84834 0.85656 1.18846 1.84861 1.72545 1.39238 1.31021 0.93195 0.93091 0.89196 0.85886 0.89585 0.79186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 15 2 O -0.31 -5.94 10.27 -34.73 -0.36 -6.30 15 3 C 0.14 3.03 6.69 -39.22 -0.26 2.77 15 4 C -0.30 -6.13 8.82 -39.19 -0.35 -6.47 15 5 C 0.01 0.27 6.31 -39.51 -0.25 0.02 15 6 Cl -0.09 -1.76 28.58 -51.86 -1.48 -3.24 15 7 C -0.02 -0.56 5.05 -38.67 -0.20 -0.76 15 8 F -0.14 -3.39 12.39 2.25 0.03 -3.36 15 9 C 0.07 1.88 4.88 -106.64 -0.52 1.36 15 10 C -0.49 -12.66 8.82 -37.87 -0.33 -12.99 15 11 H 0.09 2.45 7.98 -52.49 -0.42 2.03 15 12 C 0.06 1.43 4.67 -17.32 -0.08 1.35 15 13 N -0.77 -20.07 13.66 55.55 0.76 -19.31 15 14 Si 1.07 25.04 25.87 -169.99 -4.40 20.64 15 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.26 -6.17 5.36 56.52 0.30 -5.86 15 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 18 C -0.02 -0.51 6.75 -38.29 -0.26 -0.77 15 19 O -0.47 -10.43 12.68 -33.89 -0.43 -10.86 15 20 H 0.05 0.62 7.65 -51.93 -0.40 0.23 15 21 H 0.05 0.66 7.65 -51.93 -0.40 0.26 15 22 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.12 2.16 6.26 -52.49 -0.33 1.83 15 24 H 0.29 7.27 8.73 -40.82 -0.36 6.91 15 25 H 0.36 6.32 9.06 45.56 0.41 6.73 15 LS Contribution 240.29 15.07 3.62 3.62 Total: -1.00 -27.82 240.29 -4.31 -32.14 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -0.80 Total: 0.77 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -1.26 Total: -14.11 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.76 Total: -19.31 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.79 Total: -17.15 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.03 Total: -3.36 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.40 Total: 20.64 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.48 Total: -3.24 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.82 -4.31 -32.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258137334.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.079 kcal (2) G-P(sol) polarization free energy of solvation -27.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds