Wall clock time and date at job start Mon Mar 30 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36051 * 116.99999 * 2 1 4 4 C 1.38753 * 119.91494 * 359.97438 * 3 2 1 5 5 C 1.38790 * 120.55477 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.80413 * 180.02562 * 5 4 3 7 7 C 1.37862 * 120.38783 * 359.71199 * 5 4 3 8 8 F 1.35105 * 120.08667 * 180.28471 * 7 5 4 9 9 C 1.41001 * 119.82104 * 0.56337 * 7 5 4 10 10 C 1.41110 * 120.26925 * 179.72272 * 9 7 5 11 11 H 1.07998 * 119.99809 * 145.34766 * 10 9 7 12 12 C 1.39905 * 119.99730 * 325.33392 * 10 9 7 13 13 N 1.30902 * 119.99654 * 149.40196 * 12 10 9 14 14 Si 1.86801 * 120.00288 * 329.12367 * 12 10 9 15 15 H 1.48503 * 109.47197 * 270.27663 * 14 12 10 16 16 H 1.48499 * 109.46659 * 30.27594 * 14 12 10 17 17 H 1.48506 * 109.46953 * 150.27514 * 14 12 10 18 18 C 1.38695 * 119.91382 * 179.97438 * 3 2 1 19 19 O 1.35784 * 120.19919 * 0.02562 * 18 3 2 20 20 H 1.09002 * 109.47436 * 300.00246 * 1 2 3 21 21 H 1.08996 * 109.47091 * 60.00093 * 1 2 3 22 22 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.72554 * 359.97438 * 4 3 2 24 24 H 0.96996 * 120.00127 * 354.59503 * 13 12 10 25 25 H 0.96697 * 113.99703 * 269.97353 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2892 2.3748 -0.0005 5 6 1.9055 3.6184 -0.0011 6 17 0.9388 5.0604 -0.0011 7 6 3.2807 3.7152 0.0049 8 9 3.8742 4.9289 0.0101 9 6 4.0661 2.5442 -0.0004 10 6 5.4744 2.6324 -0.0003 11 1 6.0615 1.8958 0.5281 12 6 6.1102 3.6737 -0.6850 13 7 7.2557 4.1374 -0.2534 14 14 5.3282 4.3972 -2.2194 15 1 5.7978 3.6499 -3.4137 16 1 3.8504 4.2912 -2.1187 17 1 5.7147 5.8255 -2.3456 18 6 3.4318 1.2827 0.0005 19 8 4.1736 0.1454 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.2111 2.3115 -0.0014 24 1 7.6256 3.8143 0.5830 25 1 4.3884 -0.1840 0.8839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258137334.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:31 Heat of formation + Delta-G solvation = -134.246485 kcal Electronic energy + Delta-G solvation = -15976.270907 eV Core-core repulsion = 12894.917579 eV Total energy + Delta-G solvation = -3081.353328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.67104 -40.97836 -38.63550 -37.85666 -36.64953 -35.58774 -31.90837 -30.16048 -28.03376 -26.77276 -23.23819 -22.75987 -20.69068 -19.35515 -18.49249 -18.06752 -17.50284 -17.01092 -16.48208 -15.96525 -15.49826 -15.44471 -15.11037 -14.59321 -14.38377 -14.10187 -13.65110 -13.19283 -12.82418 -12.53418 -12.31401 -12.08880 -11.88147 -11.56858 -11.44534 -11.36980 -10.90092 -9.77304 -9.46677 -8.88876 -6.72661 0.22551 0.43776 1.08206 1.37705 1.45847 1.63879 2.13184 2.31601 2.44790 2.91262 3.42204 3.78905 4.20901 4.29763 4.46620 4.51436 4.75232 4.90375 4.96343 5.11172 5.34660 5.40535 5.48343 6.01721 6.15436 6.41115 6.52254 7.13685 7.78211 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.012358 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.111434 B = 2265.118212 C = 3216.388806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.145 3.855 4 C -0.273 4.273 5 C 0.004 3.996 6 Cl -0.063 7.063 7 C -0.047 4.047 8 F -0.144 7.144 9 C 0.063 3.937 10 C -0.524 4.524 11 H 0.075 0.925 12 C 0.033 3.967 13 N -0.801 5.801 14 Si 1.088 2.912 15 H -0.277 1.277 16 H -0.264 1.264 17 H -0.266 1.266 18 C -0.031 4.031 19 O -0.483 6.483 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.123 0.877 23 H 0.160 0.840 24 H 0.289 0.711 25 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -3.131 0.534 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.099 3.901 4 C -0.293 4.293 5 C -0.023 4.023 6 Cl -0.035 7.035 7 C -0.068 4.068 8 F -0.124 7.124 9 C 0.058 3.942 10 C -0.551 4.551 11 H 0.093 0.907 12 C -0.188 4.188 13 N -0.421 5.421 14 Si 0.910 3.090 15 H -0.204 1.204 16 H -0.189 1.189 17 H -0.191 1.191 18 C -0.078 4.078 19 O -0.291 6.291 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.141 0.859 23 H 0.178 0.822 24 H 0.100 0.900 25 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.317 -2.002 -1.208 11.556 hybrid contribution 0.218 -0.700 2.121 2.244 sum -11.099 -2.702 0.913 11.459 Atomic orbital electron populations 1.23370 0.76719 1.05481 1.02247 1.86117 1.23307 1.25708 1.88636 1.18994 0.90664 0.84707 0.95778 1.20362 1.00442 0.88214 1.20294 1.20500 0.88725 0.88793 1.04306 1.98300 1.70664 1.37558 1.96934 1.17250 0.89026 0.80433 1.20103 1.91078 1.84036 1.42236 1.95016 1.17756 0.93983 0.89568 0.92880 1.20247 0.91583 1.11701 1.31580 0.90736 1.28133 0.94461 0.92082 1.04090 1.70599 1.17956 1.33274 1.20273 0.83422 0.77238 0.76969 0.71418 1.20409 1.18886 1.19055 1.17738 0.86174 0.85478 1.18415 1.84775 1.72688 1.38785 1.32815 0.91696 0.92001 0.85897 0.82228 0.90016 0.76995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 15 2 O -0.32 -11.08 10.27 -79.95 -0.82 -11.90 15 3 C 0.15 5.80 6.69 22.50 0.15 5.95 15 4 C -0.27 -10.10 8.82 22.53 0.20 -9.91 15 5 C 0.00 0.19 6.31 22.31 0.14 0.33 15 6 Cl -0.06 -2.24 28.58 -2.72 -0.08 -2.32 15 7 C -0.05 -2.28 5.05 22.86 0.12 -2.16 15 8 F -0.14 -7.22 12.39 44.97 0.56 -6.66 15 9 C 0.06 3.16 4.88 -21.17 -0.10 3.05 15 10 C -0.52 -28.27 8.82 23.38 0.21 -28.07 15 11 H 0.07 4.14 7.98 -2.91 -0.02 4.11 15 12 C 0.03 1.77 4.67 85.24 0.40 2.17 15 13 N -0.80 -43.08 13.66 21.82 0.30 -42.78 15 14 Si 1.09 50.70 25.87 68.60 1.77 52.48 15 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 16 H -0.26 -12.32 5.36 99.48 0.53 -11.79 15 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 18 C -0.03 -1.44 6.75 23.11 0.16 -1.29 15 19 O -0.48 -21.12 12.68 -76.95 -0.98 -22.10 15 20 H 0.06 1.27 7.65 -2.39 -0.02 1.25 15 21 H 0.06 1.26 7.65 -2.39 -0.02 1.25 15 22 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.16 4.70 6.26 -2.91 -0.02 4.68 15 24 H 0.29 15.10 8.73 -92.71 -0.81 14.29 15 25 H 0.38 13.17 9.06 -74.06 -0.67 12.50 15 Total: -1.00 -59.65 240.29 3.50 -56.16 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.37 Total: 5.59 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 2.37 Total: -28.46 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.30 Total: -42.78 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.80 Total: -34.00 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.56 Total: -6.66 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.77 Total: 52.48 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.32 kcal Total: -59.65 3.50 -56.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258137334.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.091 kcal (2) G-P(sol) polarization free energy of solvation -59.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds