Wall clock time and date at job start Mon Mar 30 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35777 * 117.00379 * 2 1 4 4 C 1.38799 * 120.19362 * 270.01814 * 3 2 1 5 5 O 1.36028 * 119.92905 * 359.97438 * 4 3 2 6 6 C 1.38682 * 120.14510 * 179.97438 * 4 3 2 7 7 C 1.38972 * 120.53096 * 0.04223 * 6 4 3 8 8 F 1.35094 * 119.81121 * 180.02562 * 7 6 4 9 9 C 1.37778 * 120.37982 * 359.67482 * 7 6 4 10 10 Cl 1.73606 * 120.07343 * 180.30331 * 9 7 6 11 11 C 1.40911 * 119.84935 * 0.57846 * 9 7 6 12 12 C 1.41135 * 120.26328 * 179.71663 * 11 9 7 13 13 H 1.08000 * 119.99841 * 136.96206 * 12 11 9 14 14 C 1.39914 * 119.99839 * 316.97634 * 12 11 9 15 15 N 1.30878 * 119.99939 * 152.27365 * 14 12 11 16 16 Si 1.86798 * 119.99565 * 331.98787 * 14 12 11 17 17 H 1.48498 * 109.47764 * 264.98991 * 16 14 12 18 18 H 1.48501 * 109.47325 * 24.99457 * 16 14 12 19 19 H 1.48502 * 109.46834 * 144.99094 * 16 14 12 20 20 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47359 * 300.00928 * 1 2 3 22 22 H 1.09009 * 109.46395 * 60.00304 * 1 2 3 23 23 H 0.96697 * 114.00216 * 89.99628 * 5 4 3 24 24 H 1.07997 * 119.73301 * 180.02562 * 6 4 3 25 25 H 0.96993 * 120.00597 * 355.09059 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 2.3621 1.8319 -1.1997 5 8 2.0546 1.2280 -2.3792 6 6 2.9913 3.0677 -1.1985 7 6 3.3120 3.6955 -0.0009 8 9 3.9244 4.8996 -0.0167 9 6 3.0025 3.1003 1.2025 10 17 3.3998 3.8953 2.6939 11 6 2.3681 1.8422 1.2201 12 6 2.0525 1.2218 2.4479 13 1 1.0946 0.7406 2.5792 14 6 2.9805 1.2306 3.4950 15 7 2.5676 1.1750 4.7357 16 14 4.8089 1.3135 3.1217 17 1 5.3736 -0.0598 3.1050 18 1 5.0151 1.9497 1.7958 19 1 5.4916 2.1167 4.1677 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5140 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 1.1784 1.4542 -2.7201 24 1 3.2342 3.5460 -2.1358 25 1 1.6182 1.1997 4.9325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258227300.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:04 Heat of formation + Delta-G solvation = -114.917535 kcal Electronic energy + Delta-G solvation = -16078.708017 eV Core-core repulsion = 12998.192856 eV Total energy + Delta-G solvation = -3080.515162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.18108 -39.24350 -36.62187 -36.36868 -34.90310 -33.66725 -30.12921 -28.36517 -26.32704 -24.97579 -21.77606 -20.98983 -18.92839 -17.38334 -16.94686 -16.45205 -15.87012 -15.14575 -14.59544 -14.19321 -14.08624 -13.90311 -13.45340 -13.12115 -12.79637 -12.45951 -12.12286 -11.56386 -11.18255 -10.91479 -10.52036 -10.30179 -10.11550 -9.96874 -9.33289 -9.07042 -8.93466 -7.91911 -7.55432 -7.42337 -4.81802 1.84647 2.07775 3.10605 3.25507 3.30830 3.50516 3.95187 4.03960 4.53547 4.61830 4.90566 5.27643 5.71230 5.79146 5.90442 6.05190 6.23254 6.45263 6.69903 6.79148 7.22725 7.28472 7.37269 7.77287 7.99390 8.04780 8.41522 8.62405 9.78436 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.014185 C = 0.009937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.815179 B = 1973.427147 C = 2817.182501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.145 3.855 5 O -0.494 6.494 6 C -0.288 4.288 7 C 0.155 3.845 8 F -0.145 7.145 9 C -0.167 4.167 10 Cl -0.067 7.067 11 C 0.105 3.895 12 C -0.493 4.493 13 H 0.091 0.909 14 C 0.068 3.932 15 N -0.781 5.781 16 Si 1.043 2.957 17 H -0.282 1.282 18 H -0.255 1.255 19 H -0.274 1.274 20 H 0.079 0.921 21 H 0.040 0.960 22 H 0.028 0.972 23 H 0.378 0.622 24 H 0.125 0.875 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 1.749 -5.856 6.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.223 6.223 3 C -0.075 4.075 4 C 0.100 3.900 5 O -0.302 6.302 6 C -0.308 4.308 7 C 0.135 3.865 8 F -0.124 7.124 9 C -0.196 4.196 10 Cl -0.039 7.039 11 C 0.100 3.900 12 C -0.519 4.519 13 H 0.109 0.891 14 C -0.157 4.157 15 N -0.401 5.401 16 Si 0.867 3.133 17 H -0.209 1.209 18 H -0.179 1.179 19 H -0.199 1.199 20 H 0.098 0.902 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.232 0.768 24 H 0.143 0.857 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.166 1.398 -4.844 5.044 hybrid contribution -2.219 0.682 -0.580 2.393 sum -2.385 2.080 -5.423 6.279 Atomic orbital electron populations 1.22838 0.82387 1.01546 0.99331 1.86072 1.17559 1.24706 1.93937 1.19012 1.08598 0.89389 0.90473 1.18246 0.97885 0.89689 0.84168 1.84823 1.38375 1.70614 1.36433 1.20266 1.16599 0.98019 0.95934 1.16967 0.95722 0.81113 0.92698 1.91416 1.80616 1.42877 1.97441 1.20721 1.17764 0.96704 0.84393 1.98215 1.92512 1.78894 1.34272 1.17392 0.90071 0.88975 0.93581 1.20344 1.03938 1.31786 0.95860 0.89095 1.27242 1.07852 0.89191 0.91420 1.70533 1.20654 1.28241 1.20661 0.83816 0.72612 0.78105 0.78764 1.20908 1.17907 1.19895 0.90200 0.94111 0.95358 0.76815 0.85682 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.13 101.05 1.12 1.71 15 2 O -0.31 -6.75 9.65 -33.81 -0.33 -7.08 15 3 C -0.03 -0.67 5.77 -38.26 -0.22 -0.89 15 4 C 0.15 3.03 6.70 -39.21 -0.26 2.77 15 5 O -0.49 -8.87 13.28 -34.60 -0.46 -9.33 15 6 C -0.29 -5.92 9.95 -39.15 -0.39 -6.30 15 7 C 0.16 3.44 7.26 -39.48 -0.29 3.15 15 8 F -0.14 -3.05 16.81 2.25 0.04 -3.01 15 9 C -0.17 -3.98 4.47 -38.74 -0.17 -4.15 15 10 Cl -0.07 -1.55 22.84 -51.86 -1.18 -2.74 15 11 C 0.10 2.56 4.63 -106.68 -0.49 2.07 15 12 C -0.49 -12.53 8.56 -37.86 -0.32 -12.85 15 13 H 0.09 2.35 7.46 -52.49 -0.39 1.96 15 14 C 0.07 1.72 4.08 -17.33 -0.07 1.65 15 15 N -0.78 -19.88 13.66 55.55 0.76 -19.12 15 16 Si 1.04 24.44 24.99 -169.99 -4.25 20.19 15 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 18 H -0.26 -6.03 5.74 56.52 0.32 -5.71 15 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 20 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.04 0.72 7.55 -51.93 -0.39 0.33 15 22 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 15 23 H 0.38 4.76 9.06 45.56 0.41 5.17 15 24 H 0.13 2.27 8.06 -52.49 -0.42 1.85 15 25 H 0.29 7.13 8.73 -40.82 -0.36 6.78 15 LS Contribution 240.87 15.07 3.63 3.63 Total: -1.00 -27.23 240.87 -3.76 -30.98 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -0.87 Total: -0.67 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.10 Total: -12.85 kcal Atomic # 7 Polarization: -19.88 SS G_CDS: 0.76 Total: -19.12 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.79 Total: -16.41 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.25 Total: 20.19 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -1.18 Total: -2.74 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.23 -3.76 -30.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258227300.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.936 kcal (2) G-P(sol) polarization free energy of solvation -27.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds