Wall clock time and date at job start Mon Mar 30 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36018 * 117.00112 * 2 1 4 4 C 1.38729 * 119.93147 * 359.97438 * 3 2 1 5 5 C 1.38926 * 120.53351 * 180.02562 * 4 3 2 6 6 F 1.35096 * 119.80927 * 180.02562 * 5 4 3 7 7 C 1.37814 * 120.38219 * 359.74125 * 5 4 3 8 8 Cl 1.73603 * 120.07880 * 180.27969 * 7 5 4 9 9 C 1.40883 * 119.84831 * 0.53220 * 7 5 4 10 10 C 1.41137 * 120.26293 * 179.74423 * 9 7 5 11 11 H 1.08001 * 119.99938 * 136.98502 * 10 9 7 12 12 C 1.39913 * 119.99870 * 316.98879 * 10 9 7 13 13 N 1.30881 * 119.99953 * 152.22131 * 12 10 9 14 14 Si 1.86801 * 119.99832 * 331.94291 * 12 10 9 15 15 H 1.48498 * 109.47217 * 264.97779 * 14 12 10 16 16 H 1.48494 * 109.47191 * 24.98173 * 14 12 10 17 17 H 1.48501 * 109.46936 * 144.98247 * 14 12 10 18 18 C 1.38766 * 119.93125 * 179.97438 * 3 2 1 19 19 O 1.35790 * 120.18700 * 0.02633 * 18 3 2 20 20 H 1.08998 * 109.47354 * 300.00649 * 1 2 3 21 21 H 1.09010 * 109.46749 * 60.00103 * 1 2 3 22 22 H 1.09001 * 109.47508 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.73000 * 359.97438 * 4 3 2 24 24 H 0.97003 * 119.99541 * 355.17025 * 13 12 10 25 25 H 0.96701 * 113.99742 * 269.97087 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2896 2.3745 -0.0005 5 6 1.9073 3.6189 -0.0011 6 9 1.1559 4.7416 -0.0011 7 6 3.2821 3.7146 0.0043 8 17 4.0457 5.2737 0.0109 9 6 4.0665 2.5444 -0.0010 10 6 5.4751 2.6323 -0.0010 11 1 6.0568 1.9806 0.6341 12 6 6.1179 3.5637 -0.8237 13 7 7.2859 4.0440 -0.4803 14 14 5.3125 4.1159 -2.4162 15 1 5.8286 3.2965 -3.5420 16 1 3.8412 3.9437 -2.3124 17 1 5.6275 5.5464 -2.6601 18 6 3.4324 1.2829 0.0005 19 8 4.1743 0.1455 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 0.2114 2.3116 -0.0014 24 1 7.6741 3.8085 0.3770 25 1 4.3892 -0.1838 0.8839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258234358.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:29 Heat of formation + Delta-G solvation = -116.066159 kcal Electronic energy + Delta-G solvation = -15963.426500 eV Core-core repulsion = 12882.861531 eV Total energy + Delta-G solvation = -3080.564970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.17023 -39.38763 -37.19676 -35.88682 -34.69150 -33.68682 -30.06712 -28.56102 -26.72254 -24.98908 -21.59717 -20.95343 -18.80325 -17.52606 -17.01788 -16.40628 -15.47109 -15.38671 -14.81367 -14.57093 -14.11441 -13.89094 -13.45135 -13.09447 -12.71503 -12.26544 -12.06119 -11.54211 -11.30851 -11.08369 -10.88749 -10.34012 -9.94707 -9.74576 -9.61732 -9.28622 -8.92607 -7.87244 -7.41640 -7.22615 -4.78885 2.03696 2.18864 3.15050 3.27380 3.35115 3.52149 3.80606 4.01458 4.16144 4.77429 5.08511 5.29854 5.37612 5.43910 5.64178 5.76378 6.08743 6.52629 6.77927 6.83829 7.04617 7.28960 7.40307 7.89196 7.90992 8.09854 8.45435 8.79088 9.81805 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.011841 C = 0.009234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.287447 B = 2364.086211 C = 3031.584137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.156 3.844 4 C -0.343 4.343 5 C 0.169 3.831 6 F -0.146 7.146 7 C -0.182 4.182 8 Cl -0.070 7.070 9 C 0.116 3.884 10 C -0.494 4.494 11 H 0.092 0.908 12 C 0.068 3.932 13 N -0.783 5.783 14 Si 1.044 2.956 15 H -0.283 1.283 16 H -0.255 1.255 17 H -0.274 1.274 18 C -0.028 4.028 19 O -0.470 6.470 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.091 0.909 23 H 0.125 0.875 24 H 0.291 0.709 25 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -2.585 1.108 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.110 3.890 4 C -0.363 4.363 5 C 0.149 3.851 6 F -0.125 7.125 7 C -0.210 4.210 8 Cl -0.042 7.042 9 C 0.112 3.888 10 C -0.520 4.520 11 H 0.110 0.890 12 C -0.156 4.156 13 N -0.403 5.403 14 Si 0.868 3.132 15 H -0.210 1.210 16 H -0.179 1.179 17 H -0.199 1.199 18 C -0.075 4.075 19 O -0.275 6.275 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.109 0.891 23 H 0.143 0.857 24 H 0.103 0.897 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.498 -1.587 -0.785 7.704 hybrid contribution -0.458 -0.513 2.046 2.159 sum -7.956 -2.100 1.261 8.325 Atomic orbital electron populations 1.22934 0.79860 1.02757 1.01091 1.86119 1.20211 1.27214 1.88993 1.18981 0.91210 0.83227 0.95569 1.20098 0.99042 0.90037 1.27149 1.16875 0.86714 0.81611 0.99892 1.91407 1.76506 1.50681 1.93861 1.20624 0.89657 0.86890 1.23857 1.98207 1.81686 1.27424 1.96833 1.17290 0.94102 0.87580 0.89870 1.20313 0.90688 1.18175 1.22823 0.89030 1.27225 0.94549 0.90089 1.03767 1.70538 1.16163 1.30578 1.22971 0.83810 0.78406 0.77366 0.73582 1.21017 1.17942 1.19947 1.17782 0.84737 0.85976 1.18990 1.84866 1.72484 1.39170 1.31029 0.93141 0.93065 0.89100 0.85717 0.89749 0.79156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 15 2 O -0.31 -5.88 10.27 -34.59 -0.36 -6.24 15 3 C 0.16 3.33 6.69 -39.20 -0.26 3.07 15 4 C -0.34 -7.05 9.02 -39.15 -0.35 -7.41 15 5 C 0.17 3.79 7.26 -39.48 -0.29 3.51 15 6 F -0.15 -3.10 16.81 2.25 0.04 -3.06 15 7 C -0.18 -4.38 4.48 -38.74 -0.17 -4.55 15 8 Cl -0.07 -1.63 22.84 -51.86 -1.18 -2.81 15 9 C 0.12 2.89 4.63 -106.67 -0.49 2.39 15 10 C -0.49 -12.70 8.56 -37.86 -0.32 -13.02 15 11 H 0.09 2.39 8.06 -52.49 -0.42 1.96 15 12 C 0.07 1.75 4.08 -17.33 -0.07 1.68 15 13 N -0.78 -20.12 13.66 55.55 0.76 -19.36 15 14 Si 1.04 24.63 24.99 -169.99 -4.25 20.38 15 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 16 H -0.26 -6.07 5.75 56.52 0.32 -5.75 15 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 18 C -0.03 -0.66 6.75 -38.27 -0.26 -0.91 15 19 O -0.47 -10.35 12.73 -33.87 -0.43 -10.78 15 20 H 0.05 0.62 7.65 -51.93 -0.40 0.23 15 21 H 0.05 0.66 7.65 -51.92 -0.40 0.26 15 22 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.12 2.19 6.26 -52.49 -0.33 1.87 15 24 H 0.29 7.21 8.73 -40.82 -0.36 6.85 15 25 H 0.36 6.28 9.06 45.56 0.41 6.69 15 LS Contribution 238.08 15.07 3.59 3.59 Total: -1.00 -27.53 238.08 -3.85 -31.38 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -0.78 Total: 0.76 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.23 Total: -13.86 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.76 Total: -19.36 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.79 Total: -17.02 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.25 Total: 20.38 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.18 Total: -2.81 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.53 -3.85 -31.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258234358.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.682 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds