Wall clock time and date at job start Mon Mar 30 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29749 * 122.36966 * 2 1 4 4 C 1.31896 * 117.28161 * 180.02562 * 3 2 1 5 5 C 1.39603 * 125.26872 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99460 * 186.49397 * 5 4 3 7 7 C 1.40316 * 119.99896 * 6.21667 * 5 4 3 8 8 N 1.30641 * 120.00521 * 353.30668 * 7 5 4 9 9 Si 1.86810 * 119.99659 * 173.31240 * 7 5 4 10 10 H 1.48505 * 109.46904 * 94.96607 * 9 7 5 11 11 H 1.48498 * 109.46943 * 214.96545 * 9 7 5 12 12 H 1.48501 * 109.46880 * 334.96540 * 9 7 5 13 13 S 1.76110 * 109.45368 * 0.24263 * 4 3 2 14 14 C 1.37836 * 122.37067 * 180.02562 * 2 1 3 15 15 C 1.47366 * 125.99537 * 359.97438 * 14 2 1 16 16 C 1.40281 * 120.95550 * 47.12321 * 15 14 2 17 17 C 1.37861 * 118.95870 * 179.73174 * 16 15 14 18 18 N 1.31975 * 120.93041 * 0.55522 * 17 16 15 19 19 C 1.31982 * 122.12831 * 359.71620 * 18 17 16 20 20 C 1.37860 * 120.93224 * 359.97438 * 19 18 17 21 21 H 1.08996 * 109.47364 * 89.07610 * 1 2 3 22 22 H 1.09003 * 109.46826 * 209.07608 * 1 2 3 23 23 H 1.08999 * 109.47399 * 329.07012 * 1 2 3 24 24 H 0.96996 * 120.00626 * 180.02562 * 8 7 5 25 25 H 1.07996 * 120.52079 * 359.97203 * 16 15 14 26 26 H 1.07993 * 119.53706 * 180.27063 * 17 16 15 27 27 H 1.08004 * 119.53264 * 180.02562 * 19 18 17 28 28 H 1.08000 * 120.52141 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2017 1.0959 0.0000 4 6 3.5155 0.9789 -0.0005 5 6 4.4195 2.0427 -0.0011 6 1 5.4772 1.8523 -0.1073 7 6 3.9533 3.3596 0.1304 8 7 2.6696 3.6021 0.1219 9 14 5.1683 4.7662 0.3175 10 1 5.4359 5.3693 -1.0129 11 1 4.5975 5.7962 1.2222 12 1 6.4371 4.2511 0.8918 13 16 3.9524 -0.7271 -0.0081 14 6 2.2450 -1.1642 -0.0005 15 6 1.7017 -2.5340 -0.0006 16 6 0.6745 -2.9028 -0.8819 17 6 0.2008 -4.1971 -0.8506 18 7 0.6924 -5.0790 -0.0008 19 6 1.6548 -4.7738 0.8492 20 6 2.1933 -3.5052 0.8843 21 1 -0.3634 0.0166 -1.0275 22 1 -0.3633 -0.8982 0.4994 23 1 -0.3634 0.8815 0.5282 24 1 2.3473 4.5125 0.2124 25 1 0.2639 -2.1851 -1.5766 26 1 -0.5868 -4.4923 -1.5280 27 1 2.0263 -5.5288 1.5263 28 1 2.9810 -3.2629 1.5823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258668124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:52 Heat of formation + Delta-G solvation = 52.626307 kcal Electronic energy + Delta-G solvation = -14570.758855 eV Core-core repulsion = 12098.447716 eV Total energy + Delta-G solvation = -2472.311139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38690 -37.72018 -34.32429 -32.49597 -30.74966 -30.01153 -27.59098 -26.10158 -22.76019 -22.38723 -21.80401 -18.73695 -17.33712 -16.35427 -15.59072 -15.28928 -15.06797 -15.00510 -13.73303 -13.51029 -13.15765 -13.01952 -12.61190 -12.42392 -11.91712 -11.75637 -11.44509 -11.36129 -11.06371 -10.88999 -10.60390 -10.05961 -9.67279 -9.09722 -9.00567 -8.66641 -7.88374 -7.68184 -7.44764 -6.99906 -4.88313 1.54539 1.68221 2.41499 2.81575 2.86731 2.90651 3.14396 3.50278 3.62345 4.10121 4.46813 4.89282 4.95739 5.38935 5.57795 5.68454 5.73634 5.75392 6.12772 6.18047 6.27464 6.35509 6.48283 6.57498 6.75212 6.86791 7.06189 7.28298 7.40480 7.68621 7.92034 8.26559 8.47531 9.65369 9.78907 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.050254 B = 0.005929 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.036860 B = 4721.524012 C = 5132.295628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.180 3.820 3 N -0.538 5.538 4 C 0.239 3.761 5 C -0.356 4.356 6 H 0.101 0.899 7 C 0.064 3.936 8 N -0.685 5.685 9 Si 0.926 3.074 10 H -0.263 1.263 11 H -0.269 1.269 12 H -0.254 1.254 13 S -0.116 6.116 14 C -0.379 4.379 15 C 0.111 3.889 16 C -0.186 4.186 17 C 0.095 3.905 18 N -0.518 5.518 19 C 0.095 3.905 20 C -0.190 4.190 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.288 0.712 25 H 0.127 0.873 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -2.735 0.125 2.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.033 3.967 3 N -0.256 5.256 4 C -0.007 4.007 5 C -0.398 4.398 6 H 0.119 0.881 7 C -0.169 4.169 8 N -0.305 5.305 9 Si 0.748 3.252 10 H -0.188 1.188 11 H -0.194 1.194 12 H -0.178 1.178 13 S 0.142 5.858 14 C -0.501 4.501 15 C 0.101 3.899 16 C -0.208 4.208 17 C -0.061 4.061 18 N -0.228 5.228 19 C -0.060 4.060 20 C -0.211 4.211 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.145 0.855 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.639 -3.459 0.131 3.520 hybrid contribution 0.017 1.422 0.101 1.426 sum -0.622 -2.037 0.232 2.142 Atomic orbital electron populations 1.20334 0.90204 1.01641 1.01448 1.20673 0.96155 0.86834 0.93047 1.66865 1.03204 1.26014 1.29540 1.23846 0.91545 0.90881 0.94456 1.19280 0.94689 0.89238 1.36568 0.88119 1.26256 0.96357 1.00362 0.93899 1.69966 1.14500 1.22907 1.23105 0.85981 0.80556 0.79058 0.79631 1.18760 1.19361 1.17781 1.84134 1.08966 1.10278 1.82437 1.22683 0.92990 0.94104 1.40362 1.18254 0.90815 0.90854 0.89988 1.22274 1.00346 0.97395 1.00768 1.22447 0.98012 0.89649 0.95963 1.67550 1.12152 1.36883 1.06258 1.22431 0.92761 0.94825 0.96001 1.22329 1.03322 0.94588 1.00877 0.91768 0.92271 0.91476 0.90067 0.85484 0.83732 0.83801 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.06 36.01 0.33 -1.17 15 2 C 0.18 4.30 6.78 -83.62 -0.57 3.73 15 3 N -0.54 -14.23 8.59 -8.84 -0.08 -14.30 15 4 C 0.24 6.19 7.05 -17.01 -0.12 6.07 15 5 C -0.36 -8.63 9.37 -38.29 -0.36 -8.99 15 6 H 0.10 2.23 7.86 -52.49 -0.41 1.82 15 7 C 0.06 1.44 5.49 -17.28 -0.09 1.35 15 8 N -0.69 -16.44 11.88 55.57 0.66 -15.78 15 9 Si 0.93 16.24 29.57 -169.99 -5.03 11.21 15 10 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 11 H -0.27 -4.63 7.11 56.52 0.40 -4.22 15 12 H -0.25 -4.38 7.11 56.52 0.40 -3.98 15 13 S -0.12 -2.75 23.36 -107.50 -2.51 -5.26 15 14 C -0.38 -8.78 6.11 -36.02 -0.22 -9.00 15 15 C 0.11 2.27 5.35 -104.65 -0.56 1.71 15 16 C -0.19 -3.33 8.58 -38.95 -0.33 -3.66 15 17 C 0.10 1.55 11.17 -17.63 -0.20 1.36 15 18 N -0.52 -9.02 10.34 -13.38 -0.14 -9.16 15 19 C 0.10 1.60 11.17 -17.63 -0.20 1.40 15 20 C -0.19 -3.54 9.90 -38.95 -0.39 -3.92 15 21 H 0.06 1.13 8.05 -51.93 -0.42 0.72 15 22 H 0.06 1.06 7.05 -51.93 -0.37 0.69 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 24 H 0.29 6.09 8.29 -40.82 -0.34 5.75 15 25 H 0.13 2.14 7.44 -52.49 -0.39 1.75 15 26 H 0.15 1.88 8.06 -52.49 -0.42 1.45 15 27 H 0.14 1.94 8.06 -52.48 -0.42 1.52 15 28 H 0.13 2.28 8.06 -52.49 -0.42 1.85 15 LS Contribution 266.10 15.07 4.01 4.01 Total: -1.00 -28.09 266.10 -8.20 -36.29 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.41 Total: 4.10 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.71 Total: -11.12 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.45 Total: -39.23 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.51 Total: -5.26 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.09 -8.20 -36.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258668124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.916 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds