Wall clock time and date at job start Mon Mar 30 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29749 * 122.36966 * 2 1 4 4 C 1.31896 * 117.28161 * 180.02562 * 3 2 1 5 5 C 1.39603 * 125.26872 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99460 * 186.49397 * 5 4 3 7 7 C 1.40316 * 119.99896 * 6.21667 * 5 4 3 8 8 N 1.30641 * 120.00521 * 353.30668 * 7 5 4 9 9 Si 1.86810 * 119.99659 * 173.31240 * 7 5 4 10 10 H 1.48505 * 109.46904 * 94.96607 * 9 7 5 11 11 H 1.48498 * 109.46943 * 214.96545 * 9 7 5 12 12 H 1.48501 * 109.46880 * 334.96540 * 9 7 5 13 13 S 1.76110 * 109.45368 * 0.24263 * 4 3 2 14 14 C 1.37836 * 122.37067 * 180.02562 * 2 1 3 15 15 C 1.47366 * 125.99537 * 359.97438 * 14 2 1 16 16 C 1.40281 * 120.95550 * 47.12321 * 15 14 2 17 17 C 1.37861 * 118.95870 * 179.73174 * 16 15 14 18 18 N 1.31975 * 120.93041 * 0.55522 * 17 16 15 19 19 C 1.31982 * 122.12831 * 359.71620 * 18 17 16 20 20 C 1.37860 * 120.93224 * 359.97438 * 19 18 17 21 21 H 1.08996 * 109.47364 * 89.07610 * 1 2 3 22 22 H 1.09003 * 109.46826 * 209.07608 * 1 2 3 23 23 H 1.08999 * 109.47399 * 329.07012 * 1 2 3 24 24 H 0.96996 * 120.00626 * 180.02562 * 8 7 5 25 25 H 1.07996 * 120.52079 * 359.97203 * 16 15 14 26 26 H 1.07993 * 119.53706 * 180.27063 * 17 16 15 27 27 H 1.08004 * 119.53264 * 180.02562 * 19 18 17 28 28 H 1.08000 * 120.52141 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2017 1.0959 0.0000 4 6 3.5155 0.9789 -0.0005 5 6 4.4195 2.0427 -0.0011 6 1 5.4772 1.8523 -0.1073 7 6 3.9533 3.3596 0.1304 8 7 2.6696 3.6021 0.1219 9 14 5.1683 4.7662 0.3175 10 1 5.4359 5.3693 -1.0129 11 1 4.5975 5.7962 1.2222 12 1 6.4371 4.2511 0.8918 13 16 3.9524 -0.7271 -0.0081 14 6 2.2450 -1.1642 -0.0005 15 6 1.7017 -2.5340 -0.0006 16 6 0.6745 -2.9028 -0.8819 17 6 0.2008 -4.1971 -0.8506 18 7 0.6924 -5.0790 -0.0008 19 6 1.6548 -4.7738 0.8492 20 6 2.1933 -3.5052 0.8843 21 1 -0.3634 0.0166 -1.0275 22 1 -0.3633 -0.8982 0.4994 23 1 -0.3634 0.8815 0.5282 24 1 2.3473 4.5125 0.2124 25 1 0.2639 -2.1851 -1.5766 26 1 -0.5868 -4.4923 -1.5280 27 1 2.0263 -5.5288 1.5263 28 1 2.9810 -3.2629 1.5823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258668124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:52 Heat of formation + Delta-G solvation = 36.518309 kcal Electronic energy + Delta-G solvation = -14571.457350 eV Core-core repulsion = 12098.447716 eV Total energy + Delta-G solvation = -2473.009634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80981 -39.47857 -36.03710 -34.05516 -32.15465 -31.63875 -29.31129 -27.74557 -24.19493 -24.05365 -23.37191 -20.47820 -18.96808 -18.08473 -17.07330 -16.89849 -16.55241 -16.46154 -15.27815 -15.11297 -14.57855 -14.40877 -14.27795 -14.06317 -13.52616 -13.34784 -13.03820 -12.82008 -12.63227 -12.49036 -12.02772 -11.77595 -11.30912 -10.69445 -10.40802 -10.01480 -9.71102 -9.53649 -9.21782 -8.71407 -6.71200 -0.03978 0.32295 0.74421 1.25367 1.42195 1.48681 1.59320 1.73575 2.13247 2.39853 3.03401 3.15777 3.66079 4.01883 4.06624 4.12905 4.30520 4.35427 4.56994 4.76201 4.80259 4.81882 4.94068 5.00647 5.20478 5.27902 5.53075 5.70900 5.87048 5.92529 6.15951 6.46479 7.11744 7.89554 8.08326 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.050254 B = 0.005929 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.036860 B = 4721.524012 C = 5132.295628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.151 3.849 3 N -0.571 5.571 4 C 0.206 3.794 5 C -0.380 4.380 6 H 0.112 0.888 7 C 0.024 3.976 8 N -0.725 5.725 9 Si 1.007 2.993 10 H -0.255 1.255 11 H -0.262 1.262 12 H -0.248 1.248 13 S -0.129 6.129 14 C -0.378 4.378 15 C 0.082 3.918 16 C -0.185 4.185 17 C 0.103 3.897 18 N -0.522 5.522 19 C 0.103 3.897 20 C -0.199 4.199 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.298 0.702 25 H 0.136 0.864 26 H 0.184 0.816 27 H 0.178 0.822 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -3.411 0.004 3.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.006 3.994 3 N -0.291 5.291 4 C -0.040 4.040 5 C -0.421 4.421 6 H 0.130 0.870 7 C -0.205 4.205 8 N -0.345 5.345 9 Si 0.824 3.176 10 H -0.179 1.179 11 H -0.186 1.186 12 H -0.171 1.171 13 S 0.129 5.871 14 C -0.501 4.501 15 C 0.071 3.929 16 C -0.207 4.207 17 C -0.052 4.052 18 N -0.233 5.233 19 C -0.053 4.053 20 C -0.220 4.220 21 H 0.099 0.901 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.153 0.847 26 H 0.201 0.799 27 H 0.195 0.805 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.956 -4.171 0.007 4.279 hybrid contribution 0.041 1.451 0.123 1.457 sum -0.915 -2.720 0.130 2.873 Atomic orbital electron populations 1.20321 0.87535 1.02038 1.02601 1.21285 0.98060 0.86625 0.93453 1.66869 1.03676 1.27397 1.31142 1.24321 0.92116 0.91899 0.95626 1.19763 0.95180 0.90155 1.37024 0.87036 1.27308 0.98199 1.02362 0.92624 1.70025 1.16636 1.24240 1.23632 0.84811 0.77784 0.75097 0.79894 1.17889 1.18563 1.17141 1.83961 1.10514 1.09959 1.82714 1.23048 0.92140 0.95525 1.39341 1.18396 0.92512 0.90003 0.91977 1.22402 0.99490 0.98454 1.00333 1.23010 0.97997 0.88589 0.95647 1.67688 1.12134 1.37088 1.06378 1.22894 0.91899 0.94612 0.95880 1.22405 1.03538 0.95231 1.00846 0.90090 0.90847 0.91963 0.89088 0.84662 0.79942 0.80475 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.55 9.06 71.24 0.65 -1.90 15 2 C 0.15 7.34 6.78 42.77 0.29 7.63 15 3 N -0.57 -31.19 8.59 -181.89 -1.56 -32.75 15 4 C 0.21 11.08 7.05 85.01 0.60 11.68 15 5 C -0.38 -18.85 9.37 23.11 0.22 -18.64 15 6 H 0.11 5.04 7.86 -2.91 -0.02 5.02 15 7 C 0.02 1.09 5.49 85.38 0.47 1.56 15 8 N -0.73 -35.47 11.88 21.89 0.26 -35.21 15 9 Si 1.01 32.84 29.57 68.60 2.03 34.87 15 10 H -0.25 -7.92 7.11 99.48 0.71 -7.22 15 11 H -0.26 -8.13 7.11 99.48 0.71 -7.43 15 12 H -0.25 -7.77 7.11 99.48 0.71 -7.06 15 13 S -0.13 -6.31 23.36 -56.49 -1.32 -7.63 15 14 C -0.38 -17.76 6.11 24.58 0.15 -17.61 15 15 C 0.08 3.26 5.35 -19.88 -0.11 3.16 15 16 C -0.18 -6.25 8.58 22.68 0.19 -6.06 15 17 C 0.10 3.03 11.17 84.58 0.94 3.97 15 18 N -0.52 -16.46 10.34 -196.24 -2.03 -18.49 15 19 C 0.10 3.16 11.17 84.58 0.94 4.10 15 20 C -0.20 -7.18 9.90 22.68 0.22 -6.96 15 21 H 0.08 2.80 8.05 -2.39 -0.02 2.78 15 22 H 0.07 2.57 7.05 -2.39 -0.02 2.55 15 23 H 0.06 2.42 8.14 -2.39 -0.02 2.41 15 24 H 0.30 12.77 8.29 -92.71 -0.77 12.00 15 25 H 0.14 4.29 7.44 -2.91 -0.02 4.27 15 26 H 0.18 3.91 8.06 -2.91 -0.02 3.88 15 27 H 0.18 4.17 8.06 -2.91 -0.02 4.14 15 28 H 0.12 4.40 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -61.68 266.10 3.13 -58.55 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.18 Total: 19.73 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.57 Total: -19.06 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -3.33 Total: -86.45 kcal Atomic # 14 Polarization: 32.84 SS G_CDS: 2.03 Total: 34.87 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -1.32 Total: -7.63 kcal Total: -61.68 3.13 -58.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258668124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.064 kcal (2) G-P(sol) polarization free energy of solvation -61.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds