Wall clock time and date at job start Mon Mar 30 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29747 * 122.36730 * 2 1 4 4 C 1.31901 * 117.28339 * 180.26547 * 3 2 1 5 5 C 1.39603 * 125.27497 * 179.76520 * 4 3 2 6 6 H 1.07996 * 120.00132 * 174.14680 * 5 4 3 7 7 C 1.40308 * 119.99931 * 354.14080 * 5 4 3 8 8 N 1.30661 * 120.00032 * 6.07954 * 7 5 4 9 9 Si 1.86797 * 120.00132 * 186.07865 * 7 5 4 10 10 H 1.48500 * 109.46992 * 94.98496 * 9 7 5 11 11 H 1.48504 * 109.47221 * 214.98336 * 9 7 5 12 12 H 1.48504 * 109.47056 * 334.98565 * 9 7 5 13 13 S 1.76115 * 109.45256 * 359.73976 * 4 3 2 14 14 C 1.37837 * 122.37451 * 179.78372 * 2 1 3 15 15 C 1.47331 * 125.98885 * 0.03621 * 14 2 1 16 16 C 1.39857 * 119.76597 * 179.69023 * 15 14 2 17 17 C 1.38277 * 119.02943 * 179.74664 * 16 15 14 18 18 C 1.38874 * 118.55100 * 0.52069 * 17 16 15 19 19 C 1.38407 * 119.43987 * 359.48108 * 18 17 16 20 20 N 1.31649 * 120.94283 * 0.27230 * 19 18 17 21 21 H 1.09002 * 109.47539 * 270.21345 * 1 2 3 22 22 H 1.08997 * 109.47467 * 30.21804 * 1 2 3 23 23 H 1.09001 * 109.47057 * 150.21288 * 1 2 3 24 24 H 0.97001 * 119.99947 * 179.97438 * 8 7 5 25 25 H 1.08000 * 120.47880 * 0.03307 * 16 15 14 26 26 H 1.08008 * 120.72801 * 180.25155 * 17 16 15 27 27 H 1.07995 * 120.28227 * 179.75387 * 18 17 16 28 28 H 1.07996 * 119.53243 * 180.24817 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2016 1.0959 0.0000 4 6 3.5154 0.9790 -0.0054 5 6 4.4194 2.0428 -0.0110 6 1 5.4784 1.8519 0.0802 7 6 3.9521 3.3599 -0.1352 8 7 2.6679 3.6011 -0.1260 9 14 5.1657 4.7687 -0.3135 10 1 5.3580 5.0771 -1.7533 11 1 4.6370 5.9687 0.3834 12 1 6.4669 4.3802 0.2876 13 16 3.9525 -0.7270 -0.0038 14 6 2.2450 -1.1641 0.0044 15 6 1.7018 -2.5336 0.0088 16 6 2.5743 -3.6267 0.0065 17 6 2.0480 -4.9053 0.0160 18 6 0.6673 -5.0548 0.0165 19 6 -0.1388 -3.9297 0.0185 20 7 0.3849 -2.7218 0.0145 21 1 -0.3634 0.0038 1.0276 22 1 -0.3634 0.8880 -0.5172 23 1 -0.3633 -0.8919 -0.5105 24 1 2.3449 4.5117 -0.2115 25 1 3.6434 -3.4742 0.0020 26 1 2.6965 -5.7690 0.0186 27 1 0.2263 -6.0406 0.0199 28 1 -1.2126 -4.0442 0.0229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258888168.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:48 Heat of formation + Delta-G solvation = 57.958530 kcal Electronic energy + Delta-G solvation = -14602.883264 eV Core-core repulsion = 12130.803348 eV Total energy + Delta-G solvation = -2472.079916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27463 -37.62458 -34.25932 -32.00788 -31.36584 -29.79379 -27.46926 -25.91422 -22.76658 -22.31926 -21.74951 -18.70105 -17.31000 -16.32380 -15.82818 -15.31573 -14.84626 -14.64680 -13.66612 -13.56402 -12.80633 -12.77668 -12.57767 -12.35518 -11.77817 -11.69728 -11.25736 -11.24762 -11.16213 -10.80197 -10.56709 -9.81790 -9.77989 -9.34094 -8.91413 -8.57192 -7.86097 -7.58109 -7.23057 -7.01330 -4.87081 1.44978 1.90934 2.53147 2.80093 2.87251 2.93810 3.09053 3.47339 3.61096 4.10855 4.64865 5.03203 5.11857 5.30534 5.50592 5.69957 5.82448 5.89654 6.26574 6.40610 6.50278 6.55274 6.66832 6.72363 6.82860 6.92204 7.17365 7.37618 7.50820 7.69653 7.90311 8.27392 8.74729 9.63911 9.79936 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.050315 B = 0.006073 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.358757 B = 4609.601464 C = 5147.250765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.210 3.790 3 N -0.539 5.539 4 C 0.237 3.763 5 C -0.344 4.344 6 H 0.103 0.897 7 C 0.060 3.940 8 N -0.678 5.678 9 Si 0.929 3.071 10 H -0.262 1.262 11 H -0.269 1.269 12 H -0.254 1.254 13 S -0.117 6.117 14 C -0.368 4.368 15 C 0.276 3.724 16 C -0.207 4.207 17 C -0.063 4.063 18 C -0.240 4.240 19 C 0.115 3.885 20 N -0.508 5.508 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.290 0.710 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 -4.819 -0.232 4.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 N -0.258 5.258 4 C -0.008 4.008 5 C -0.385 4.385 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.297 5.297 9 Si 0.750 3.250 10 H -0.187 1.187 11 H -0.193 1.193 12 H -0.177 1.177 13 S 0.137 5.863 14 C -0.491 4.491 15 C 0.142 3.858 16 C -0.228 4.228 17 C -0.088 4.088 18 C -0.261 4.261 19 C -0.045 4.045 20 N -0.219 5.219 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.111 0.889 24 H 0.101 0.899 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.236 -3.977 -0.231 3.990 hybrid contribution 0.225 -0.382 -0.037 0.445 sum -0.010 -4.359 -0.268 4.367 Atomic orbital electron populations 1.20552 0.89255 1.02542 1.01681 1.20925 0.96876 0.86585 0.89574 1.66965 1.03142 1.26488 1.29157 1.23931 0.91737 0.91030 0.94100 1.19386 0.94773 0.89219 1.35121 0.87872 1.26323 0.96455 1.00507 0.94038 1.69987 1.14507 1.23188 1.21983 0.85935 0.80438 0.78687 0.79905 1.18674 1.19331 1.17743 1.83974 1.08805 1.10134 1.83351 1.22506 0.92565 0.93750 1.40313 1.18783 0.87721 0.90940 0.88325 1.21955 1.00513 0.92816 1.07532 1.21267 0.95143 0.96737 0.95681 1.21766 0.94430 0.99532 1.10364 1.22587 0.99647 0.87976 0.94254 1.67840 1.13148 1.24192 1.16761 0.92181 0.92666 0.88934 0.89881 0.85951 0.86222 0.86357 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.62 36.01 0.35 -1.43 15 2 C 0.21 5.39 6.79 -83.62 -0.57 4.82 15 3 N -0.54 -14.76 8.58 -8.84 -0.08 -14.84 15 4 C 0.24 6.24 7.05 -17.01 -0.12 6.12 15 5 C -0.34 -8.35 9.37 -38.29 -0.36 -8.71 15 6 H 0.10 2.27 7.86 -52.49 -0.41 1.85 15 7 C 0.06 1.36 5.49 -17.27 -0.09 1.27 15 8 N -0.68 -16.38 11.87 55.57 0.66 -15.72 15 9 Si 0.93 16.19 29.57 -169.99 -5.03 11.16 15 10 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 11 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15 12 H -0.25 -4.31 7.11 56.52 0.40 -3.91 15 13 S -0.12 -2.84 22.36 -107.50 -2.40 -5.24 15 14 C -0.37 -9.15 6.50 -36.03 -0.23 -9.38 15 15 C 0.28 6.18 6.74 -83.04 -0.56 5.62 15 16 C -0.21 -4.09 9.66 -38.96 -0.38 -4.47 15 17 C -0.06 -1.03 10.16 -39.33 -0.40 -1.43 15 18 C -0.24 -3.67 10.11 -39.28 -0.40 -4.07 15 19 C 0.11 1.92 11.18 -17.57 -0.20 1.72 15 20 N -0.51 -10.45 7.19 -9.86 -0.07 -10.52 15 21 H 0.06 1.26 8.14 -51.93 -0.42 0.83 15 22 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.09 1.95 5.73 -51.93 -0.30 1.65 15 24 H 0.29 6.15 8.29 -40.82 -0.34 5.82 15 25 H 0.12 2.38 7.33 -52.49 -0.38 2.00 15 26 H 0.12 1.56 8.06 -52.48 -0.42 1.14 15 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 28 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 263.23 15.07 3.97 3.97 Total: -1.00 -28.58 263.23 -8.25 -36.83 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.34 Total: 4.30 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.96 Total: -9.94 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.51 Total: -41.07 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.40 Total: -5.24 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.58 -8.25 -36.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258888168.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.785 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds