Wall clock time and date at job start Mon Mar 30 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00295 * 2 1 4 4 H 1.48494 * 109.47291 * 270.00351 * 3 2 1 5 5 H 1.48503 * 109.46819 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.47196 * 149.99634 * 3 2 1 7 7 C 1.37880 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47188 * 179.97438 * 9 7 2 11 11 F 1.39895 * 109.47553 * 59.99790 * 10 9 7 12 12 F 1.39897 * 109.47072 * 299.99385 * 10 9 7 13 13 C 1.50706 * 109.47186 * 179.97438 * 10 9 7 14 14 C 1.38241 * 119.98981 * 89.72232 * 13 10 9 15 15 C 1.38210 * 120.01139 * 179.72300 * 14 13 10 16 16 C 1.38349 * 119.98969 * 0.55498 * 15 14 13 17 17 Cl 1.73598 * 120.01695 * 179.70185 * 16 15 14 18 18 C 1.38361 * 119.97127 * 359.71727 * 16 15 14 19 19 C 1.38214 * 119.98666 * 0.02562 * 18 16 15 20 20 H 0.97001 * 120.00225 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47577 * 59.99446 * 9 7 2 22 22 H 1.08997 * 109.47113 * 299.99511 * 9 7 2 23 23 H 1.08002 * 119.99152 * 0.02562 * 14 13 10 24 24 H 1.08002 * 120.00562 * 180.27305 * 15 14 13 25 25 H 1.07999 * 120.00328 * 179.97438 * 18 16 15 26 26 H 1.07997 * 119.99198 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 9 3.0496 -3.5880 1.1427 12 9 3.0494 -3.5880 -1.1418 13 6 1.4917 -4.9672 0.0012 14 6 1.1407 -5.5631 -1.1958 15 6 0.4547 -6.7629 -1.1958 16 6 0.1091 -7.3618 0.0024 17 17 -0.7594 -8.8650 0.0033 18 6 0.4557 -6.7621 1.2002 19 6 1.1464 -5.5650 1.1989 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 1.4070 -5.0934 -2.1312 24 1 0.1844 -7.2305 -2.1311 25 1 0.1858 -7.2290 2.1359 26 1 1.4166 -5.0966 2.1338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258952643.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:19 Heat of formation + Delta-G solvation = -110.626528 kcal Electronic energy + Delta-G solvation = -15303.627908 eV Core-core repulsion = 12235.671608 eV Total energy + Delta-G solvation = -3067.956300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.82642 -47.83418 -40.31940 -37.54002 -35.52632 -33.35542 -32.16454 -30.80974 -26.87347 -24.16541 -23.92215 -22.05513 -19.28915 -18.32488 -18.26845 -17.38033 -17.16659 -16.14981 -16.13976 -15.71030 -14.78515 -14.63038 -14.60026 -14.33812 -14.09354 -13.89045 -13.56529 -13.32467 -13.05970 -12.67710 -12.62271 -12.52336 -12.27862 -11.84866 -11.63622 -11.27880 -10.68796 -10.12929 -9.79211 -8.30407 -6.42592 -0.10704 0.20519 1.02714 1.39364 1.40107 1.52015 2.35236 2.44568 2.77349 3.03315 3.55484 3.59458 3.86319 3.93234 4.02077 4.24060 4.39990 4.53860 4.88712 4.99217 5.09475 5.14099 5.18398 5.43327 5.60886 5.62589 5.95025 6.65693 7.26202 8.81031 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.044752 B = 0.005440 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.523610 B = 5146.254959 C = 5302.404527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.055 0.945 9 C 0.000 4.000 10 C 0.337 3.663 11 F -0.206 7.206 12 F -0.206 7.206 13 C -0.151 4.151 14 C -0.086 4.086 15 C -0.106 4.106 16 C -0.029 4.029 17 Cl -0.055 7.055 18 C -0.106 4.106 19 C -0.086 4.086 20 H 0.269 0.731 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.142 0.858 24 H 0.164 0.836 25 H 0.164 0.836 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -14.734 -0.009 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.073 0.927 9 C -0.038 4.038 10 C 0.301 3.699 11 F -0.187 7.187 12 F -0.187 7.187 13 C -0.152 4.152 14 C -0.104 4.104 15 C -0.124 4.124 16 C -0.056 4.056 17 Cl -0.026 7.026 18 C -0.124 4.124 19 C -0.104 4.104 20 H 0.078 0.922 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.159 0.841 24 H 0.181 0.819 25 H 0.181 0.819 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.795 -14.759 -0.005 14.780 hybrid contribution 0.413 0.992 -0.007 1.074 sum -0.382 -13.767 -0.012 13.772 Atomic orbital electron populations 1.70039 1.07465 1.28368 1.50261 1.25817 0.95811 1.03023 0.93960 0.85428 0.78622 0.78220 0.78750 1.19471 1.20015 1.19205 1.21288 0.93288 0.91569 1.52592 0.92655 1.19937 0.93673 0.91152 0.99023 1.19846 0.83551 0.95800 0.70670 1.92900 1.76387 1.97511 1.51914 1.92900 1.76391 1.97511 1.51898 1.20551 1.02603 0.95393 0.96633 1.21065 0.96769 0.95036 0.97575 1.21234 0.98142 0.94663 0.98351 1.21139 0.99176 0.90022 0.95264 1.98369 1.74693 1.30609 1.98945 1.21238 0.98090 0.94704 0.98360 1.21067 0.96764 0.95053 0.97566 0.92190 0.94994 0.94981 0.84063 0.81862 0.81863 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.13 13.29 21.45 0.28 -53.84 15 2 C 0.01 0.76 5.46 84.66 0.46 1.22 15 3 Si 0.97 44.01 29.54 68.60 2.03 46.03 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 7 C -0.55 -31.47 8.58 25.60 0.22 -31.25 15 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 15 9 C 0.00 -0.02 4.55 29.85 0.14 0.12 15 10 C 0.34 14.88 1.81 29.85 0.05 14.93 15 11 F -0.21 -9.31 15.91 44.97 0.72 -8.59 15 12 F -0.21 -9.29 15.93 44.97 0.72 -8.57 15 13 C -0.15 -5.37 4.99 -19.86 -0.10 -5.47 15 14 C -0.09 -2.63 9.40 22.26 0.21 -2.42 15 15 C -0.11 -2.59 9.83 22.29 0.22 -2.37 15 16 C -0.03 -0.70 6.32 22.33 0.14 -0.56 15 17 Cl -0.06 -1.10 28.96 -2.72 -0.08 -1.18 15 18 C -0.11 -2.59 9.83 22.29 0.22 -2.37 15 19 C -0.09 -2.64 9.40 22.27 0.21 -2.43 15 20 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 21 H 0.03 1.72 8.14 -2.38 -0.02 1.70 15 22 H 0.03 1.73 8.14 -2.39 -0.02 1.71 15 23 H 0.14 4.18 7.61 -2.91 -0.02 4.16 15 24 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 25 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 26 H 0.14 4.18 7.60 -2.91 -0.02 4.16 15 Total: -1.00 -62.17 258.77 6.63 -55.54 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: 1.20 Total: 1.20 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 1.77 Total: -30.59 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.28 Total: -53.84 kcal Atomic # 9 Polarization: -18.60 SS G_CDS: 1.43 Total: -17.16 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -62.17 6.63 -55.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258952643.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.087 kcal (2) G-P(sol) polarization free energy of solvation -62.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds