Wall clock time and date at job start Mon Mar 30 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 116.99666 * 2 1 4 4 C 1.38730 * 120.02947 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.96688 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.02935 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.96683 * 180.02562 * 6 5 4 8 8 C 1.38427 * 120.06131 * 359.79074 * 6 5 4 9 9 C 1.38169 * 120.03101 * 0.46466 * 8 6 5 10 10 C 1.50704 * 120.01743 * 179.79067 * 9 8 6 11 11 F 1.39897 * 109.47028 * 352.41206 * 10 9 8 12 12 F 1.39901 * 109.47095 * 232.41151 * 10 9 8 13 13 C 1.50705 * 109.46852 * 112.41044 * 10 9 8 14 14 H 1.07993 * 120.00142 * 5.02785 * 13 10 9 15 15 C 1.37875 * 119.99601 * 185.29465 * 13 10 9 16 16 N 1.31516 * 119.99964 * 179.72602 * 15 13 10 17 17 Si 1.86803 * 120.00148 * 359.73230 * 15 13 10 18 18 H 1.48492 * 109.47608 * 89.99608 * 17 15 13 19 19 H 1.48506 * 109.46881 * 209.99644 * 17 15 13 20 20 H 1.48504 * 109.47098 * 329.99301 * 17 15 13 21 21 H 1.08995 * 109.47450 * 300.00114 * 1 2 3 22 22 H 1.09008 * 109.47044 * 60.00041 * 1 2 3 23 23 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.07994 * 120.01889 * 0.02562 * 4 3 2 25 25 H 1.07993 * 119.98369 * 180.02562 * 5 4 3 26 26 H 1.08003 * 119.98296 * 180.23063 * 8 6 5 27 27 H 0.97002 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9195 3.6053 0.0011 6 6 3.3024 3.6770 0.0016 7 9 3.9157 4.8808 0.0027 8 6 4.0570 2.5165 0.0060 9 6 3.4311 1.2847 0.0001 10 6 4.2529 0.0215 0.0001 11 9 5.6038 0.3440 -0.1676 12 9 3.8371 -0.8054 -1.0490 13 6 4.0673 -0.6984 1.3110 14 1 3.3581 -0.3267 2.0356 15 6 4.8071 -1.8286 1.5875 16 7 4.6491 -2.4538 2.7337 17 14 6.0340 -2.4717 0.3342 18 1 7.3597 -1.8472 0.5736 19 1 6.1502 -3.9462 0.4668 20 1 5.5671 -2.1330 -1.0343 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2126 2.3195 0.0014 25 1 1.3320 4.5114 0.0019 26 1 5.1355 2.5740 0.0102 27 1 5.1699 -3.2487 2.9284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259009622.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:41 Heat of formation + Delta-G solvation = -146.374575 kcal Electronic energy + Delta-G solvation = -18241.178422 eV Core-core repulsion = 14743.335595 eV Total energy + Delta-G solvation = -3497.842827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.54307 -47.66378 -45.51709 -39.72059 -36.84234 -32.90816 -31.65315 -29.53600 -27.45576 -26.82315 -23.67056 -21.96682 -20.78212 -17.96619 -17.51153 -17.06244 -16.70975 -15.63950 -15.40070 -15.31635 -15.07715 -14.69670 -14.39002 -14.09300 -13.45404 -12.85715 -12.64058 -12.59567 -12.42096 -12.12168 -11.92981 -11.72253 -11.50938 -10.87526 -10.70828 -10.61445 -10.51921 -9.53453 -9.32271 -8.83752 -8.76327 -7.73030 -6.34692 -4.56172 1.37677 1.51570 3.35277 3.38710 3.51588 3.63065 3.81590 4.32043 4.47096 4.70229 4.90338 5.06359 5.14015 5.26201 5.39120 5.49780 5.71832 5.77333 5.91263 6.03565 6.22919 6.32666 6.39475 6.87012 6.97650 7.05504 7.71895 8.09848 8.63716 9.20039 10.74088 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.010097 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.222904 B = 2772.326179 C = 3399.792589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.277 6.277 3 C 0.157 3.843 4 C -0.194 4.194 5 C -0.113 4.113 6 C 0.048 3.952 7 F -0.145 7.145 8 C -0.094 4.094 9 C -0.110 4.110 10 C 0.415 3.585 11 F -0.222 7.222 12 F -0.214 7.214 13 C -0.561 4.561 14 H 0.098 0.902 15 C 0.097 3.903 16 N -0.869 5.869 17 Si 0.885 3.115 18 H -0.274 1.274 19 H -0.293 1.293 20 H -0.250 1.250 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.100 0.900 24 H 0.137 0.863 25 H 0.134 0.866 26 H 0.148 0.852 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 8.245 -5.639 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.189 6.189 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.132 4.132 6 C 0.029 3.971 7 F -0.124 7.124 8 C -0.113 4.113 9 C -0.111 4.111 10 C 0.378 3.622 11 F -0.203 7.203 12 F -0.195 7.195 13 C -0.598 4.598 14 H 0.116 0.884 15 C -0.111 4.111 16 N -0.503 5.503 17 Si 0.711 3.289 18 H -0.200 1.200 19 H -0.220 1.220 20 H -0.174 1.174 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.118 0.882 24 H 0.155 0.845 25 H 0.152 0.848 26 H 0.165 0.835 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.947 7.907 -5.542 11.895 hybrid contribution 0.548 -0.038 -0.499 0.742 sum -6.400 7.868 -6.041 11.805 Atomic orbital electron populations 1.23077 0.79442 1.04033 1.00549 1.86460 1.20162 1.25046 1.87183 1.18679 0.91210 0.84924 0.94185 1.20986 1.00126 0.91195 1.08962 1.20808 0.92528 0.98410 1.01481 1.17388 0.90725 0.80307 1.08660 1.91452 1.83442 1.42906 1.94615 1.20857 1.01453 0.89744 0.99253 1.19747 0.91760 0.95321 1.04314 1.17430 0.73467 0.84577 0.86694 1.92727 1.37912 1.92905 1.96747 1.92942 1.90026 1.74251 1.62323 1.21083 1.27303 1.12085 0.99301 0.88432 1.24912 0.95717 0.95112 0.95379 1.69879 1.39518 1.18601 1.22259 0.86860 0.81502 0.77210 0.83289 1.20020 1.22001 1.17352 0.92865 0.93182 0.88182 0.84489 0.84823 0.83455 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 101.05 0.99 1.31 15 2 O -0.28 -5.46 8.91 -19.59 -0.17 -5.64 15 3 C 0.16 3.04 6.43 -39.23 -0.25 2.79 15 4 C -0.19 -2.93 9.04 -39.44 -0.36 -3.29 15 5 C -0.11 -1.65 10.02 -39.53 -0.40 -2.05 15 6 C 0.05 0.82 7.30 -39.42 -0.29 0.53 15 7 F -0.15 -2.36 17.27 2.25 0.04 -2.32 15 8 C -0.09 -1.81 9.40 -39.54 -0.37 -2.19 15 9 C -0.11 -2.39 4.99 -104.48 -0.52 -2.91 15 10 C 0.41 10.58 1.29 -29.03 -0.04 10.54 15 11 F -0.22 -5.60 13.24 2.25 0.03 -5.57 15 12 F -0.21 -5.60 13.96 2.25 0.03 -5.57 15 13 C -0.56 -15.98 8.55 -34.44 -0.29 -16.28 15 14 H 0.10 2.94 7.97 -52.49 -0.42 2.52 15 15 C 0.10 2.82 5.47 -17.82 -0.10 2.72 15 16 N -0.87 -25.94 13.96 55.43 0.77 -25.17 15 17 Si 0.88 22.80 25.77 -169.99 -4.38 18.42 15 18 H -0.27 -6.97 7.11 56.52 0.40 -6.56 15 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 20 H -0.25 -6.45 5.76 56.52 0.33 -6.12 15 21 H 0.05 0.62 7.66 -51.93 -0.40 0.22 15 22 H 0.05 0.54 7.66 -51.92 -0.40 0.14 15 23 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.14 1.59 6.30 -52.49 -0.33 1.26 15 25 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.15 2.74 7.19 -52.48 -0.38 2.36 15 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -31.45 246.65 -3.57 -35.02 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -1.98 Total: -4.06 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.62 Total: -8.83 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.77 Total: -25.17 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.17 Total: -5.64 kcal Atomic # 9 Polarization: -13.56 SS G_CDS: 0.10 Total: -13.46 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.38 Total: 18.42 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.45 -3.57 -35.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259009622.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.354 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds