Wall clock time and date at job start Mon Mar 30 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 116.99666 * 2 1 4 4 C 1.38730 * 120.02947 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.96688 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.02935 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.96683 * 180.02562 * 6 5 4 8 8 C 1.38427 * 120.06131 * 359.79074 * 6 5 4 9 9 C 1.38169 * 120.03101 * 0.46466 * 8 6 5 10 10 C 1.50704 * 120.01743 * 179.79067 * 9 8 6 11 11 F 1.39897 * 109.47028 * 352.41206 * 10 9 8 12 12 F 1.39901 * 109.47095 * 232.41151 * 10 9 8 13 13 C 1.50705 * 109.46852 * 112.41044 * 10 9 8 14 14 H 1.07993 * 120.00142 * 5.02785 * 13 10 9 15 15 C 1.37875 * 119.99601 * 185.29465 * 13 10 9 16 16 N 1.31516 * 119.99964 * 179.72602 * 15 13 10 17 17 Si 1.86803 * 120.00148 * 359.73230 * 15 13 10 18 18 H 1.48492 * 109.47608 * 89.99608 * 17 15 13 19 19 H 1.48506 * 109.46881 * 209.99644 * 17 15 13 20 20 H 1.48504 * 109.47098 * 329.99301 * 17 15 13 21 21 H 1.08995 * 109.47450 * 300.00114 * 1 2 3 22 22 H 1.09008 * 109.47044 * 60.00041 * 1 2 3 23 23 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.07994 * 120.01889 * 0.02562 * 4 3 2 25 25 H 1.07993 * 119.98369 * 180.02562 * 5 4 3 26 26 H 1.08003 * 119.98296 * 180.23063 * 8 6 5 27 27 H 0.97002 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9195 3.6053 0.0011 6 6 3.3024 3.6770 0.0016 7 9 3.9157 4.8808 0.0027 8 6 4.0570 2.5165 0.0060 9 6 3.4311 1.2847 0.0001 10 6 4.2529 0.0215 0.0001 11 9 5.6038 0.3440 -0.1676 12 9 3.8371 -0.8054 -1.0490 13 6 4.0673 -0.6984 1.3110 14 1 3.3581 -0.3267 2.0356 15 6 4.8071 -1.8286 1.5875 16 7 4.6491 -2.4538 2.7337 17 14 6.0340 -2.4717 0.3342 18 1 7.3597 -1.8472 0.5736 19 1 6.1502 -3.9462 0.4668 20 1 5.5671 -2.1330 -1.0343 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2126 2.3195 0.0014 25 1 1.3320 4.5114 0.0019 26 1 5.1355 2.5740 0.0102 27 1 5.1699 -3.2487 2.9284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259009622.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:41 Heat of formation + Delta-G solvation = -166.735610 kcal Electronic energy + Delta-G solvation = -18242.061342 eV Core-core repulsion = 14743.335595 eV Total energy + Delta-G solvation = -3498.725748 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.82737 -49.66691 -47.53354 -41.05161 -38.16979 -35.05619 -33.17912 -30.89457 -29.28810 -28.01278 -25.41773 -23.28655 -22.42816 -19.70217 -19.31446 -18.48934 -18.31711 -17.42775 -17.09312 -16.72307 -16.51439 -16.31371 -15.64250 -15.54966 -15.38477 -14.74227 -14.59183 -14.02284 -13.93484 -13.79407 -13.60052 -13.35369 -12.87983 -12.75153 -12.70010 -12.03037 -11.81587 -11.64438 -11.19723 -11.04016 -10.17242 -9.08181 -8.57676 -6.81970 0.03260 0.17766 1.28164 1.29068 1.43907 2.18582 2.39443 2.47535 2.77826 2.95780 3.32419 3.67261 3.82008 4.10303 4.12053 4.41492 4.42261 4.47864 4.63970 4.72046 4.78638 4.81926 5.04828 5.06242 5.32739 5.70613 5.90508 6.33426 6.48260 6.96282 8.55044 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.010097 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.222904 B = 2772.326179 C = 3399.792589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.143 3.857 4 C -0.177 4.177 5 C -0.089 4.089 6 C 0.045 3.955 7 F -0.141 7.141 8 C -0.106 4.106 9 C -0.153 4.153 10 C 0.412 3.588 11 F -0.225 7.225 12 F -0.221 7.221 13 C -0.564 4.564 14 H 0.069 0.931 15 C 0.050 3.950 16 N -0.905 5.905 17 Si 0.932 3.068 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.253 1.253 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.107 0.893 24 H 0.181 0.819 25 H 0.181 0.819 26 H 0.140 0.860 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 9.839 -6.547 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.096 3.904 4 C -0.195 4.195 5 C -0.108 4.108 6 C 0.026 3.974 7 F -0.120 7.120 8 C -0.125 4.125 9 C -0.155 4.155 10 C 0.375 3.625 11 F -0.206 7.206 12 F -0.203 7.203 13 C -0.601 4.601 14 H 0.087 0.913 15 C -0.154 4.154 16 N -0.540 5.540 17 Si 0.756 3.244 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.177 1.177 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.125 0.875 24 H 0.198 0.802 25 H 0.198 0.802 26 H 0.158 0.842 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.495 9.507 -6.451 14.288 hybrid contribution 0.909 -0.469 -0.189 1.040 sum -7.587 9.038 -6.639 13.540 Atomic orbital electron populations 1.23443 0.76418 1.05467 1.02807 1.86384 1.23526 1.26021 1.87335 1.18930 0.90711 0.86329 0.94440 1.21417 1.01957 0.89607 1.06503 1.21322 0.91578 0.99957 0.97924 1.17444 0.91665 0.79577 1.08728 1.91465 1.83627 1.42332 1.94589 1.20832 1.01501 0.90169 1.00016 1.19549 0.92902 0.94123 1.08943 1.17366 0.73897 0.86240 0.84950 1.92694 1.38298 1.92953 1.96654 1.92899 1.90115 1.74908 1.62340 1.21193 1.26335 1.12293 1.00269 0.91295 1.25635 0.97370 0.95516 0.96897 1.69952 1.40882 1.19467 1.23679 0.86117 0.79745 0.77526 0.81037 1.19313 1.20463 1.17665 0.91078 0.90177 0.87484 0.80157 0.80192 0.84180 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.81 113.37 1.11 1.42 15 2 O -0.32 -12.44 8.91 -93.02 -0.83 -13.27 15 3 C 0.14 5.36 6.43 22.49 0.14 5.51 15 4 C -0.18 -4.64 9.04 22.36 0.20 -4.44 15 5 C -0.09 -2.20 10.02 22.30 0.22 -1.98 15 6 C 0.05 1.41 7.30 22.37 0.16 1.57 15 7 F -0.14 -4.23 17.27 44.97 0.78 -3.45 15 8 C -0.11 -4.07 9.40 22.30 0.21 -3.86 15 9 C -0.15 -6.73 4.99 -19.77 -0.10 -6.83 15 10 C 0.41 21.44 1.29 29.10 0.04 21.47 15 11 F -0.22 -11.57 13.24 44.97 0.60 -10.97 15 12 F -0.22 -11.76 13.96 44.97 0.63 -11.13 15 13 C -0.56 -33.13 8.55 25.60 0.22 -32.92 15 14 H 0.07 4.35 7.97 -2.91 -0.02 4.32 15 15 C 0.05 2.99 5.47 84.65 0.46 3.45 15 16 N -0.90 -55.18 13.96 21.45 0.30 -54.89 15 17 Si 0.93 47.33 25.77 68.60 1.77 49.10 15 18 H -0.27 -13.22 7.11 99.48 0.71 -12.51 15 19 H -0.28 -13.36 7.11 99.48 0.71 -12.66 15 20 H -0.25 -12.88 5.76 99.48 0.57 -12.31 15 21 H 0.07 1.42 7.66 -2.39 -0.02 1.40 15 22 H 0.08 1.41 7.66 -2.38 -0.02 1.39 15 23 H 0.11 2.34 8.14 -2.39 -0.02 2.33 15 24 H 0.18 3.11 6.30 -2.91 -0.02 3.10 15 25 H 0.18 2.82 8.06 -2.91 -0.02 2.80 15 26 H 0.14 5.34 7.19 -2.91 -0.02 5.32 15 27 H 0.28 15.68 8.31 -92.71 -0.77 14.91 15 Total: -1.00 -70.10 246.65 6.99 -63.11 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: 1.07 Total: -1.90 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 2.68 Total: -16.60 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.30 Total: -54.89 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.83 Total: -13.27 kcal Atomic # 9 Polarization: -27.56 SS G_CDS: 2.00 Total: -25.56 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.77 Total: 49.10 kcal Total: -70.10 6.99 -63.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259009622.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.622 kcal (2) G-P(sol) polarization free energy of solvation -70.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds