Wall clock time and date at job start Mon Mar 30 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31847 * 119.04743 * 89.99987 * 10 9 7 12 12 C 1.32521 * 121.12307 * 179.97438 * 11 10 9 13 13 C 1.38175 * 119.22570 * 359.97438 * 12 11 10 14 14 C 1.40077 * 118.27021 * 0.02562 * 13 12 11 15 15 C 1.47521 * 120.58718 * 180.02562 * 14 13 12 16 16 C 1.34973 * 125.28344 * 179.71841 * 15 14 13 17 17 C 1.37740 * 114.71966 * 179.85921 * 16 15 14 18 18 C 1.33781 * 115.08083 * 0.42457 * 17 16 15 19 19 S 1.75863 * 109.74972 * 359.77530 * 18 17 16 20 20 N 1.31628 * 119.04097 * 269.72239 * 10 9 7 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07995 * 120.39170 * 179.97438 * 12 11 10 25 25 H 1.07997 * 120.86630 * 179.97438 * 13 12 11 26 26 H 1.07995 * 122.63736 * 0.02562 * 16 15 14 27 27 H 1.07996 * 122.45742 * 180.18065 * 17 16 15 28 28 H 1.07998 * 125.12166 * 179.76454 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6461 -4.1364 1.1401 12 6 3.5063 -5.1435 1.1837 13 6 3.9721 -5.6846 0.0007 14 6 3.5112 -5.1399 -1.2048 15 6 3.9746 -5.6786 -2.4976 16 6 3.5897 -5.2314 -3.7115 17 6 4.1616 -5.8916 -4.7765 18 6 5.0023 -6.8786 -4.4466 19 16 5.1086 -7.0084 -2.6960 20 7 2.6413 -4.1288 -1.1633 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 3.8394 -5.5368 2.1327 25 1 4.6738 -6.5055 0.0053 26 1 2.8905 -4.4181 -3.8378 27 1 3.9442 -5.6340 -5.8025 28 1 5.5352 -7.5018 -5.1495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259015395.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:29 Heat of formation + Delta-G solvation = 74.886550 kcal Electronic energy + Delta-G solvation = -14345.525832 eV Core-core repulsion = 11874.179970 eV Total energy + Delta-G solvation = -2471.345862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37911 -37.69475 -33.78463 -33.34526 -31.98677 -29.15316 -28.13908 -25.01638 -24.10332 -22.80974 -21.36182 -19.27691 -17.67686 -16.75995 -16.42208 -15.77339 -15.05487 -14.85283 -14.33771 -14.22127 -13.19193 -13.04981 -12.56563 -12.51473 -12.17990 -12.02630 -11.38347 -11.02187 -10.89212 -10.67421 -10.51085 -10.37076 -9.79853 -9.63744 -8.96122 -8.65475 -8.55286 -8.43760 -8.27634 -6.06880 -4.09296 0.43975 1.45889 1.55443 1.83579 1.87689 2.86731 3.31987 3.37354 3.42051 4.31269 4.37550 4.53871 4.76950 4.85163 4.96066 5.27324 5.30611 5.38352 5.45426 5.59746 5.93998 6.09652 6.19479 6.33379 6.45120 6.98691 7.45392 7.47121 7.62529 7.87067 8.20675 8.86406 8.90183 9.52484 11.04162 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.005677 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.552878 B = 4931.129979 C = 5476.873679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.054 0.946 9 C 0.079 3.921 10 C 0.370 3.630 11 N -0.519 5.519 12 C 0.150 3.850 13 C -0.256 4.256 14 C 0.236 3.764 15 C -0.148 4.148 16 C -0.088 4.088 17 C -0.136 4.136 18 C -0.212 4.212 19 S 0.123 5.877 20 N -0.506 5.506 21 H 0.264 0.736 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.162 0.838 25 H 0.134 0.866 26 H 0.155 0.845 27 H 0.144 0.856 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -14.500 -6.072 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.040 3.960 10 C 0.105 3.895 11 N -0.234 5.234 12 C -0.016 4.016 13 C -0.280 4.280 14 C 0.088 3.912 15 C -0.265 4.265 16 C -0.120 4.120 17 C -0.166 4.166 18 C -0.348 4.348 19 S 0.387 5.613 20 N -0.221 5.221 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.179 0.821 25 H 0.152 0.848 26 H 0.173 0.827 27 H 0.162 0.838 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.517 -14.565 -5.055 18.118 hybrid contribution 0.454 1.016 -1.004 1.499 sum 9.971 -13.549 -6.059 17.881 Atomic orbital electron populations 1.69945 1.05948 1.27023 1.50101 1.24925 0.94941 0.99175 0.94980 0.86447 0.79732 0.82811 0.78183 1.20508 1.20992 1.19887 1.20771 0.92778 0.89276 1.51646 0.92804 1.18282 0.91205 0.86707 0.99764 1.24455 0.91437 0.92222 0.81355 1.68491 1.12601 1.10854 1.31423 1.23086 0.90395 0.90347 0.97771 1.22563 1.06110 1.04982 0.94309 1.19214 0.91084 0.90719 0.90155 1.22582 1.05588 1.02989 0.95389 1.20603 1.00374 1.00871 0.90149 1.20170 0.98799 0.97001 1.00670 1.25846 1.06241 1.04747 0.97984 1.83967 1.43307 1.32046 1.01997 1.68545 1.11910 1.10037 1.31601 0.92655 0.93161 0.93280 0.82116 0.84849 0.82695 0.83816 0.81610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.51 -14.62 9.09 -34.44 -0.31 -14.93 15 8 H 0.05 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.08 2.13 5.41 -29.03 -0.16 1.98 15 10 C 0.37 8.85 6.83 -157.29 -1.07 7.78 15 11 N -0.52 -11.38 10.32 -10.82 -0.11 -11.49 15 12 C 0.15 2.56 11.29 -17.28 -0.20 2.36 15 13 C -0.26 -4.12 9.71 -38.92 -0.38 -4.49 15 14 C 0.24 4.37 6.78 -82.69 -0.56 3.81 15 15 C -0.15 -2.30 6.38 -36.96 -0.24 -2.54 15 16 C -0.09 -1.29 9.86 -40.92 -0.40 -1.69 15 17 C -0.14 -1.55 10.16 -41.33 -0.42 -1.97 15 18 C -0.21 -2.14 11.23 29.17 0.33 -1.81 15 19 S 0.12 1.41 22.34 -107.50 -2.40 -0.99 15 20 N -0.51 -11.27 10.00 -7.39 -0.07 -11.34 15 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 22 H 0.05 1.41 8.14 -51.93 -0.42 0.99 15 23 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.16 2.02 8.06 -52.49 -0.42 1.60 15 25 H 0.13 1.66 7.40 -52.49 -0.39 1.28 15 26 H 0.16 2.44 8.01 -52.49 -0.42 2.02 15 27 H 0.14 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.17 1.16 8.06 -52.49 -0.42 0.73 15 LS Contribution 270.92 15.07 4.08 4.08 Total: -1.00 -31.85 270.92 -8.76 -40.60 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -2.46 Total: -2.28 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.51 Total: -9.83 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.55 Total: -48.48 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.40 Total: -0.99 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.85 -8.76 -40.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259015395.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.491 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds