Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35976 * 117.00089 * 2 1 4 4 C 1.38747 * 119.96064 * 0.02562 * 3 2 1 5 5 C 1.38191 * 120.03911 * 179.97438 * 4 3 2 6 6 F 1.35099 * 120.02394 * 180.02562 * 5 4 3 7 7 C 1.39326 * 119.95502 * 0.02562 * 5 4 3 8 8 S 1.76193 * 120.03865 * 179.97438 * 7 5 4 9 9 C 1.76197 * 100.00335 * 186.97163 * 8 7 5 10 10 H 1.08007 * 119.99661 * 5.67586 * 9 8 7 11 11 C 1.38656 * 120.00279 * 185.67405 * 9 8 7 12 12 N 1.31677 * 120.00187 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00108 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47357 * 89.99400 * 13 11 9 15 15 H 1.48498 * 109.47233 * 210.00137 * 13 11 9 16 16 H 1.48506 * 109.46617 * 329.99606 * 13 11 9 17 17 C 1.39058 * 119.92357 * 359.97438 * 7 5 4 18 18 C 1.38185 * 119.96440 * 359.70418 * 17 7 5 19 19 F 1.35102 * 119.98192 * 180.31316 * 18 17 7 20 20 H 1.09001 * 109.47190 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46624 * 60.00277 * 1 2 3 22 22 H 1.08992 * 109.46860 * 299.99873 * 1 2 3 23 23 H 1.07999 * 119.98409 * 359.97438 * 4 3 2 24 24 H 0.97002 * 119.99969 * 180.02562 * 12 11 9 25 25 H 1.08005 * 120.01695 * 179.97438 * 17 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2900 2.3747 0.0005 5 6 1.9157 3.6068 0.0011 6 9 1.1788 4.7392 0.0021 7 6 3.3070 3.6805 0.0005 8 16 4.1071 5.2503 0.0005 9 6 5.7805 4.7410 -0.2109 10 1 6.0100 3.7004 -0.3872 11 6 6.8027 5.6759 -0.1509 12 7 8.0533 5.2951 -0.3084 13 14 6.4057 7.4755 0.1547 14 1 6.4114 7.7426 1.6154 15 1 7.4259 8.3269 -0.5083 16 1 5.0641 7.7875 -0.4004 17 6 4.0635 2.5137 0.0000 18 6 3.4344 1.2833 0.0062 19 9 4.1690 0.1495 0.0121 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8899 23 1 0.2115 2.3171 0.0005 24 1 8.7684 5.9492 -0.2661 25 1 5.1421 2.5691 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259020061.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -102.687107 kcal Electronic energy + Delta-G solvation = -15150.695455 eV Core-core repulsion = 12085.127141 eV Total energy + Delta-G solvation = -3065.568315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.46244 -48.38204 -39.57228 -36.85112 -32.83410 -30.39604 -29.65669 -27.18566 -26.08256 -22.56557 -22.36898 -18.77764 -17.93062 -17.30614 -16.73585 -16.02581 -15.71403 -15.34466 -15.05935 -14.75385 -14.70962 -14.27167 -14.03881 -13.23717 -12.88369 -12.13767 -12.01582 -11.98911 -11.51742 -11.40583 -11.24151 -10.97836 -10.78301 -9.93558 -9.43281 -9.07690 -8.83183 -8.25892 -6.89882 -6.59760 -4.36555 1.35117 1.42383 2.59556 3.09867 3.20579 3.23213 3.34063 3.70636 4.00503 4.31267 4.53149 4.60303 4.81289 4.94760 5.09181 5.12061 5.37911 5.45286 5.78805 5.98580 6.11388 6.38780 6.55039 6.90173 7.45850 7.63051 8.18767 8.81079 10.47249 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.035072 B = 0.007294 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.177175 B = 3837.805645 C = 4612.628285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.077 3.923 4 C -0.197 4.197 5 C 0.109 3.891 6 F -0.131 7.131 7 C -0.107 4.107 8 S -0.001 6.001 9 C -0.547 4.547 10 H 0.111 0.889 11 C 0.102 3.898 12 N -0.858 5.858 13 Si 0.855 3.145 14 H -0.261 1.261 15 H -0.267 1.267 16 H -0.238 1.238 17 C -0.112 4.112 18 C 0.084 3.916 19 F -0.134 7.134 20 H 0.098 0.902 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.143 0.857 24 H 0.277 0.723 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.594 -5.213 0.823 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.027 3.973 4 C -0.218 4.218 5 C 0.080 3.920 6 F -0.110 7.110 7 C -0.223 4.223 8 S 0.254 5.746 9 C -0.693 4.693 10 H 0.128 0.872 11 C -0.110 4.110 12 N -0.491 5.491 13 Si 0.679 3.321 14 H -0.186 1.186 15 H -0.192 1.192 16 H -0.162 1.162 17 C -0.139 4.139 18 C 0.062 3.938 19 F -0.113 7.113 20 H 0.116 0.884 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.160 0.840 24 H 0.088 0.912 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.563 -3.989 0.916 13.213 hybrid contribution 0.335 -0.367 0.009 0.497 sum -12.228 -4.356 0.925 13.014 Atomic orbital electron populations 1.23039 0.78675 1.03709 1.01354 1.86115 1.21102 1.25676 1.89506 1.18422 0.90326 0.84706 1.03858 1.20674 1.00271 0.90137 1.10711 1.16766 0.87384 0.81726 1.06110 1.91467 1.76481 1.49118 1.93925 1.22026 0.93874 1.01025 1.05402 1.83165 1.05406 1.01864 1.84210 1.22740 0.88498 1.00042 1.58064 0.87194 1.24786 0.94064 0.99449 0.92655 1.69933 0.98927 1.35722 1.44521 0.86804 0.80896 0.84067 0.80373 1.18600 1.19157 1.16210 1.21318 1.02707 0.88244 1.01611 1.16872 0.85593 0.82741 1.08554 1.91469 1.76731 1.48770 1.94310 0.88355 0.92670 0.92691 0.83971 0.91240 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 15 2 O -0.31 -4.65 10.36 -19.66 -0.20 -4.86 15 3 C 0.08 1.31 6.70 -39.12 -0.26 1.05 15 4 C -0.20 -3.11 9.00 -39.41 -0.35 -3.46 15 5 C 0.11 2.02 7.28 -39.19 -0.29 1.73 15 6 F -0.13 -2.41 16.76 2.25 0.04 -2.38 15 7 C -0.11 -2.26 6.10 -38.87 -0.24 -2.49 15 8 S 0.00 -0.02 19.22 -107.50 -2.07 -2.08 15 9 C -0.55 -14.58 9.53 30.89 0.29 -14.29 15 10 H 0.11 3.04 5.20 -52.48 -0.27 2.77 15 11 C 0.10 2.75 5.50 -17.46 -0.10 2.65 15 12 N -0.86 -24.05 13.97 55.48 0.78 -23.28 15 13 Si 0.85 19.61 27.73 -169.99 -4.71 14.89 15 14 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 16 H -0.24 -5.32 6.74 56.52 0.38 -4.94 15 17 C -0.11 -2.33 9.19 -39.30 -0.36 -2.69 15 18 C 0.08 1.60 7.30 -39.32 -0.29 1.32 15 19 F -0.13 -2.58 17.11 2.25 0.04 -2.54 15 20 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15 22 H 0.05 0.47 7.66 -51.93 -0.40 0.08 15 23 H 0.14 1.76 6.29 -52.49 -0.33 1.43 15 24 H 0.28 7.18 8.31 -40.82 -0.34 6.84 15 25 H 0.17 3.78 5.02 -52.48 -0.26 3.52 15 LS Contribution 244.79 15.07 3.69 3.69 Total: -1.00 -28.18 244.79 -4.28 -32.46 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -1.24 Total: -0.98 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.60 Total: -14.93 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.78 Total: -23.28 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.20 Total: -4.86 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.08 Total: -4.92 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.89 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.07 Total: -2.08 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.18 -4.28 -32.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259020061.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.225 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds