Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35976 * 117.00089 * 2 1 4 4 C 1.38747 * 119.96064 * 0.02562 * 3 2 1 5 5 C 1.38191 * 120.03911 * 179.97438 * 4 3 2 6 6 F 1.35099 * 120.02394 * 180.02562 * 5 4 3 7 7 C 1.39326 * 119.95502 * 0.02562 * 5 4 3 8 8 S 1.76193 * 120.03865 * 179.97438 * 7 5 4 9 9 C 1.76197 * 100.00335 * 186.97163 * 8 7 5 10 10 H 1.08007 * 119.99661 * 5.67586 * 9 8 7 11 11 C 1.38656 * 120.00279 * 185.67405 * 9 8 7 12 12 N 1.31677 * 120.00187 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00108 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47357 * 89.99400 * 13 11 9 15 15 H 1.48498 * 109.47233 * 210.00137 * 13 11 9 16 16 H 1.48506 * 109.46617 * 329.99606 * 13 11 9 17 17 C 1.39058 * 119.92357 * 359.97438 * 7 5 4 18 18 C 1.38185 * 119.96440 * 359.70418 * 17 7 5 19 19 F 1.35102 * 119.98192 * 180.31316 * 18 17 7 20 20 H 1.09001 * 109.47190 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46624 * 60.00277 * 1 2 3 22 22 H 1.08992 * 109.46860 * 299.99873 * 1 2 3 23 23 H 1.07999 * 119.98409 * 359.97438 * 4 3 2 24 24 H 0.97002 * 119.99969 * 180.02562 * 12 11 9 25 25 H 1.08005 * 120.01695 * 179.97438 * 17 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2900 2.3747 0.0005 5 6 1.9157 3.6068 0.0011 6 9 1.1788 4.7392 0.0021 7 6 3.3070 3.6805 0.0005 8 16 4.1071 5.2503 0.0005 9 6 5.7805 4.7410 -0.2109 10 1 6.0100 3.7004 -0.3872 11 6 6.8027 5.6759 -0.1509 12 7 8.0533 5.2951 -0.3084 13 14 6.4057 7.4755 0.1547 14 1 6.4114 7.7426 1.6154 15 1 7.4259 8.3269 -0.5083 16 1 5.0641 7.7875 -0.4004 17 6 4.0635 2.5137 0.0000 18 6 3.4344 1.2833 0.0062 19 9 4.1690 0.1495 0.0121 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8899 23 1 0.2115 2.3171 0.0005 24 1 8.7684 5.9492 -0.2661 25 1 5.1421 2.5691 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259020061.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -119.982548 kcal Electronic energy + Delta-G solvation = -15151.445442 eV Core-core repulsion = 12085.127141 eV Total energy + Delta-G solvation = -3066.318301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.95644 -49.91284 -40.88194 -38.24959 -34.85335 -31.87972 -31.04172 -28.24713 -28.04403 -23.97588 -23.88020 -20.49454 -19.40364 -18.77046 -18.27233 -17.35445 -17.33076 -17.15655 -16.46467 -16.18056 -16.07338 -15.73490 -15.48051 -14.72962 -14.57483 -13.79588 -13.57961 -13.39486 -13.05985 -13.02679 -12.55997 -12.40924 -12.27117 -11.69865 -11.28385 -10.99766 -10.35004 -9.82282 -8.64257 -8.61459 -6.38640 -0.15682 -0.05681 0.87485 1.28656 1.39019 1.51105 2.11931 2.13661 2.20923 2.40418 2.78261 3.07824 3.14195 3.54962 3.90281 4.32939 4.35703 4.44945 4.48919 4.69233 4.77839 4.89231 4.99106 5.43624 5.62510 6.09821 6.21435 6.78179 8.49444 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.035072 B = 0.007294 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.177175 B = 3837.805645 C = 4612.628285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.106 3.894 4 C -0.178 4.178 5 C 0.119 3.881 6 F -0.127 7.127 7 C -0.131 4.131 8 S -0.017 6.017 9 C -0.561 4.561 10 H 0.083 0.917 11 C 0.052 3.948 12 N -0.904 5.904 13 Si 0.912 3.088 14 H -0.255 1.255 15 H -0.256 1.256 16 H -0.229 1.229 17 C -0.119 4.119 18 C 0.066 3.934 19 F -0.139 7.139 20 H 0.126 0.874 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.190 0.810 24 H 0.282 0.718 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.937 -5.550 1.034 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.055 3.945 4 C -0.198 4.198 5 C 0.091 3.909 6 F -0.105 7.105 7 C -0.246 4.246 8 S 0.233 5.767 9 C -0.707 4.707 10 H 0.101 0.899 11 C -0.155 4.155 12 N -0.539 5.539 13 Si 0.733 3.267 14 H -0.179 1.179 15 H -0.180 1.180 16 H -0.152 1.152 17 C -0.145 4.145 18 C 0.044 3.956 19 F -0.118 7.118 20 H 0.144 0.856 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.207 0.793 24 H 0.092 0.908 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.957 -4.392 1.126 16.589 hybrid contribution 1.133 -0.583 -0.065 1.275 sum -14.825 -4.975 1.062 15.673 Atomic orbital electron populations 1.23546 0.75317 1.06349 1.03049 1.86147 1.24434 1.24325 1.88623 1.18418 0.89434 0.86084 1.00529 1.21023 1.02376 0.88099 1.08311 1.16878 0.86302 0.82869 1.04847 1.91486 1.76064 1.49189 1.93787 1.21982 0.95081 0.99584 1.07971 1.82775 1.03298 1.03933 1.86648 1.22879 0.90754 0.99175 1.57930 0.89933 1.25661 0.93805 1.03751 0.92330 1.70024 1.00030 1.37391 1.46455 0.85938 0.81298 0.78890 0.80613 1.17937 1.17965 1.15225 1.21061 1.01613 0.89389 1.02413 1.16939 0.86906 0.81934 1.09812 1.91451 1.77139 1.48743 1.94452 0.85593 0.90900 0.90857 0.79279 0.90825 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 15 2 O -0.32 -8.34 10.36 -93.27 -0.97 -9.31 15 3 C 0.11 3.25 6.70 22.57 0.15 3.40 15 4 C -0.18 -4.84 9.00 22.38 0.20 -4.64 15 5 C 0.12 4.12 7.28 22.52 0.16 4.28 15 6 F -0.13 -4.29 16.76 44.97 0.75 -3.53 15 7 C -0.13 -5.51 6.10 22.73 0.14 -5.37 15 8 S -0.02 -0.82 19.22 -56.49 -1.09 -1.90 15 9 C -0.56 -31.26 9.53 67.92 0.65 -30.61 15 10 H 0.08 4.93 5.20 -2.91 -0.02 4.91 15 11 C 0.05 2.88 5.50 84.82 0.47 3.35 15 12 N -0.90 -52.75 13.97 21.62 0.30 -52.45 15 13 Si 0.91 40.90 27.73 68.60 1.90 42.80 15 14 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 15 H -0.26 -10.84 7.11 99.48 0.71 -10.14 15 16 H -0.23 -9.81 6.74 99.48 0.67 -9.14 15 17 C -0.12 -5.06 9.19 22.45 0.21 -4.85 15 18 C 0.07 2.47 7.30 22.44 0.16 2.63 15 19 F -0.14 -5.36 17.11 44.97 0.77 -4.59 15 20 H 0.13 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.07 0.82 7.66 -2.39 -0.02 0.80 15 22 H 0.07 0.82 7.66 -2.39 -0.02 0.80 15 23 H 0.19 3.41 6.29 -2.91 -0.02 3.39 15 24 H 0.28 15.11 8.31 -92.71 -0.77 14.34 15 25 H 0.14 6.86 5.02 -2.91 -0.01 6.85 15 Total: -1.00 -63.12 244.79 6.14 -56.98 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.21 Total: 2.56 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.25 Total: -30.56 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.30 Total: -52.45 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.97 Total: -9.31 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 1.52 Total: -8.12 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.90 Total: 42.80 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -1.09 Total: -1.90 kcal Total: -63.12 6.14 -56.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259020061.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.003 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds