Wall clock time and date at job start Mon Mar 30 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35958 * 117.00360 * 2 1 4 4 C 1.38655 * 120.06119 * 0.02562 * 3 2 1 5 5 C 1.38188 * 119.96847 * 179.70618 * 4 3 2 6 6 C 1.38260 * 120.09056 * 0.54617 * 5 4 3 7 7 C 1.50700 * 119.93193 * 179.72930 * 6 5 4 8 8 F 1.39898 * 109.47099 * 149.72623 * 7 6 5 9 9 F 1.39900 * 109.47389 * 29.72354 * 7 6 5 10 10 C 1.50702 * 109.46869 * 269.72373 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.38250 * 120.12955 * 359.45171 * 6 5 4 19 19 C 1.38329 * 120.02904 * 0.27471 * 18 6 5 20 20 F 1.35103 * 120.04786 * 179.97438 * 19 18 6 21 21 H 1.08997 * 109.47681 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46715 * 300.00432 * 1 2 3 23 23 H 1.08999 * 109.46988 * 59.99936 * 1 2 3 24 24 H 1.08004 * 120.01867 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.95179 * 180.29305 * 5 4 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 27 27 H 1.08004 * 119.98667 * 180.24841 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9218 3.6053 0.0067 6 6 3.3025 3.6775 0.0009 7 6 3.9852 5.0210 0.0014 8 9 5.2148 4.9190 0.6608 9 9 3.1781 5.9540 0.6613 10 6 4.2127 5.4694 -1.4192 11 1 3.8943 4.8443 -2.2404 12 6 4.8216 6.6807 -1.6707 13 7 5.0152 7.0745 -2.9105 14 14 5.3716 7.7623 -0.2505 15 1 6.7678 7.4192 0.1211 16 1 5.3043 9.1883 -0.6594 17 1 4.4799 7.5392 0.9158 18 6 4.0580 2.5197 0.0004 19 6 3.4334 1.2855 -0.0001 20 9 4.1713 0.1538 -0.0011 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2138 2.3201 0.0005 25 1 1.3344 4.5115 0.0119 26 1 5.4439 7.9264 -3.0874 27 1 5.1365 2.5789 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259025323.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:19 Heat of formation + Delta-G solvation = -167.810406 kcal Electronic energy + Delta-G solvation = -17803.627484 eV Core-core repulsion = 14304.855130 eV Total energy + Delta-G solvation = -3498.772354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.89009 -49.69187 -47.57705 -41.01874 -38.60456 -35.04723 -32.39372 -31.80003 -29.39463 -28.05330 -25.03338 -23.82238 -22.27071 -19.74558 -19.44077 -18.47421 -18.39677 -17.45080 -17.17475 -17.09612 -16.75551 -16.06624 -15.76420 -15.56320 -15.25647 -14.82436 -14.63850 -14.30532 -14.00356 -13.83678 -13.57046 -13.17193 -12.95446 -12.78020 -12.60740 -12.16671 -12.07920 -11.61776 -11.22889 -11.03339 -10.02889 -9.27618 -8.60776 -6.89914 0.03581 0.06229 1.30469 1.31603 1.45948 2.12581 2.18310 2.41080 2.73377 2.92838 3.21986 3.64049 3.84986 3.95872 4.18742 4.39006 4.42760 4.43724 4.56635 4.71573 4.75221 4.78842 4.98735 5.04412 5.46117 5.49380 5.86436 6.23468 6.30162 6.92230 8.51416 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.038782 B = 0.007016 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.802118 B = 3990.195797 C = 4156.868846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.102 3.898 4 C -0.167 4.167 5 C -0.062 4.062 6 C -0.136 4.136 7 C 0.408 3.592 8 F -0.225 7.225 9 F -0.218 7.218 10 C -0.585 4.585 11 H 0.071 0.929 12 C 0.053 3.947 13 N -0.902 5.902 14 Si 0.926 3.074 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.237 1.237 18 C -0.097 4.097 19 C 0.048 3.952 20 F -0.139 7.139 21 H 0.125 0.875 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.182 0.818 25 H 0.149 0.851 26 H 0.280 0.720 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 -10.039 7.181 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.056 3.944 4 C -0.185 4.185 5 C -0.080 4.080 6 C -0.137 4.137 7 C 0.372 3.628 8 F -0.206 7.206 9 F -0.199 7.199 10 C -0.622 4.622 11 H 0.090 0.910 12 C -0.153 4.153 13 N -0.537 5.537 14 Si 0.749 3.251 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.160 1.160 18 C -0.116 4.116 19 C 0.028 3.972 20 F -0.118 7.118 21 H 0.143 0.857 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.200 0.800 25 H 0.166 0.834 26 H 0.090 0.910 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.637 -10.126 7.078 15.669 hybrid contribution 0.724 0.712 0.167 1.029 sum -8.913 -9.414 7.245 14.851 Atomic orbital electron populations 1.23524 0.75332 1.06226 1.03046 1.86113 1.24456 1.25029 1.88421 1.19029 0.90156 0.86653 0.98600 1.21373 1.01956 0.89346 1.05823 1.21038 0.92507 0.99344 0.95149 1.20032 0.95542 0.93113 1.05059 1.17445 0.73828 0.84514 0.86975 1.92786 1.47456 1.96183 1.84197 1.92874 1.74185 1.68863 1.83978 1.21346 1.44545 1.06760 0.89558 0.91042 1.25692 0.92855 0.98259 0.98464 1.69955 1.40455 1.22549 1.20712 0.86232 0.79963 0.77909 0.80989 1.19655 1.20282 1.15987 1.20729 1.01491 0.89701 0.99638 1.16870 0.86863 0.82127 1.11317 1.91450 1.76838 1.48874 1.94635 0.85734 0.90717 0.91102 0.80046 0.83360 0.91040 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 15 2 O -0.33 -8.42 10.36 -93.08 -0.96 -9.38 15 3 C 0.10 3.07 6.69 22.53 0.15 3.22 15 4 C -0.17 -4.44 9.04 22.36 0.20 -4.24 15 5 C -0.06 -2.10 9.39 22.26 0.21 -1.89 15 6 C -0.14 -5.63 4.93 -19.86 -0.10 -5.73 15 7 C 0.41 19.92 1.50 29.10 0.04 19.96 15 8 F -0.22 -11.07 14.18 44.97 0.64 -10.43 15 9 F -0.22 -10.39 13.31 44.97 0.60 -9.80 15 10 C -0.59 -32.94 9.19 25.60 0.24 -32.70 15 11 H 0.07 4.33 7.98 -2.91 -0.02 4.30 15 12 C 0.05 3.02 5.47 84.66 0.46 3.48 15 13 N -0.90 -53.61 13.96 21.45 0.30 -53.31 15 14 Si 0.93 44.77 25.99 68.60 1.78 46.55 15 15 H -0.27 -12.94 7.11 99.48 0.71 -12.23 15 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 17 H -0.24 -11.18 5.48 99.48 0.55 -10.63 15 18 C -0.10 -3.77 9.37 22.29 0.21 -3.56 15 19 C 0.05 1.69 7.31 22.45 0.16 1.86 15 20 F -0.14 -4.94 17.11 44.97 0.77 -4.17 15 21 H 0.12 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.07 0.82 7.66 -2.39 -0.02 0.81 15 23 H 0.07 0.85 7.66 -2.39 -0.02 0.84 15 24 H 0.18 3.15 6.30 -2.91 -0.02 3.13 15 25 H 0.15 4.68 7.59 -2.91 -0.02 4.66 15 26 H 0.28 15.35 8.31 -92.71 -0.77 14.58 15 27 H 0.14 5.52 7.60 -2.91 -0.02 5.50 15 Total: -1.00 -65.62 248.56 6.86 -58.75 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: 1.05 Total: 0.09 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 2.69 Total: -18.31 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.30 Total: -53.31 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.96 Total: -9.38 kcal Atomic # 9 Polarization: -26.41 SS G_CDS: 2.01 Total: -24.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.78 Total: 46.55 kcal Total: -65.62 6.86 -58.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259025323.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.057 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds