Wall clock time and date at job start Mon Mar 30 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37719 * 122.64070 * 2 1 4 4 C 1.33797 * 115.08671 * 180.02562 * 3 2 1 5 5 S 1.75872 * 109.74536 * 359.97438 * 4 3 2 6 6 C 1.34990 * 122.64283 * 179.71152 * 2 1 3 7 7 C 1.47525 * 125.27420 * 359.97438 * 6 2 1 8 8 C 1.40548 * 120.50898 * 180.02562 * 7 6 2 9 9 C 1.38668 * 118.54335 * 179.97438 * 8 7 6 10 10 N 1.32050 * 119.39054 * 0.02562 * 9 8 7 11 11 C 1.33466 * 120.99774 * 359.97438 * 10 9 8 12 12 C 1.41591 * 119.21330 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00356 * 180.02562 * 12 11 10 14 14 C 1.40036 * 119.99579 * 359.97438 * 12 11 10 15 15 N 1.30698 * 120.00401 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99753 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46796 * 60.00545 * 16 14 12 18 18 H 1.48501 * 109.47178 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47208 * 300.00359 * 16 14 12 20 20 N 1.33004 * 120.51011 * 359.71794 * 7 6 2 21 21 H 1.09002 * 109.47152 * 90.02504 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02604 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02585 * 1 2 3 24 24 H 1.08002 * 122.45972 * 359.97438 * 3 2 1 25 25 H 1.07996 * 125.13071 * 180.02562 * 4 3 2 26 26 H 1.08004 * 120.73015 * 0.02562 * 8 7 6 27 27 H 1.08002 * 120.30432 * 179.97438 * 9 8 7 28 28 H 0.97001 * 120.00819 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2498 1.1597 0.0000 4 6 3.5762 0.9838 -0.0005 5 16 3.9476 -0.7353 -0.0004 6 6 2.2352 -1.1367 0.0057 7 6 1.6805 -2.5037 0.0131 8 6 2.5344 -3.6201 0.0193 9 6 1.9693 -4.8864 0.0267 10 7 0.6545 -5.0093 0.0273 11 6 -0.1364 -3.9342 0.0214 12 6 -1.5414 -4.1099 0.0217 13 1 -2.1932 -3.2489 0.0166 14 6 -2.0856 -5.4001 0.0276 15 7 -1.2967 -6.4422 0.0334 16 14 -3.9392 -5.6320 0.0288 17 1 -4.5172 -5.0044 -1.1866 18 1 -4.2567 -7.0826 0.0348 19 1 -4.5172 -4.9932 1.2383 20 7 0.3649 -2.6986 0.0203 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5134 23 1 -0.3633 -0.8898 0.5143 24 1 1.7951 2.1393 -0.0004 25 1 4.3084 1.7777 -0.0002 26 1 3.6071 -3.4945 0.0190 27 1 2.5987 -5.7640 0.0311 28 1 -1.6736 -7.3360 0.0371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259050664.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:28 Heat of formation + Delta-G solvation = 60.079259 kcal Electronic energy + Delta-G solvation = -14768.585825 eV Core-core repulsion = 12296.597871 eV Total energy + Delta-G solvation = -2471.987954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87940 -38.98510 -35.74087 -34.06485 -32.68619 -31.12030 -28.79307 -28.01026 -24.55587 -23.87328 -23.22571 -20.18775 -19.08622 -18.22157 -17.46503 -16.70736 -16.17753 -15.79504 -15.42072 -15.35517 -14.49316 -14.43896 -14.05206 -13.51158 -13.18690 -12.98085 -12.86126 -12.82502 -12.70945 -12.49287 -11.96317 -11.71291 -11.45672 -11.18554 -10.84591 -10.21953 -9.29701 -9.24684 -9.09055 -8.43347 -6.76328 -0.33752 0.65827 0.74190 1.10638 1.15038 1.40377 1.53069 1.54345 1.95555 2.20119 2.77283 3.60411 3.90969 4.03843 4.14578 4.22180 4.55798 4.61110 4.68120 4.76156 4.88511 4.96296 5.10407 5.15360 5.29462 5.34125 5.60400 5.71837 5.88240 6.14637 6.53843 6.61993 7.11225 8.18718 8.36424 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037852 B = 0.006510 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.550173 B = 4299.905038 C = 5024.305311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.193 4.193 5 S 0.132 5.868 6 C -0.187 4.187 7 C 0.236 3.764 8 C -0.364 4.364 9 C 0.145 3.855 10 N -0.545 5.545 11 C 0.363 3.637 12 C -0.434 4.434 13 H 0.092 0.908 14 C 0.024 3.976 15 N -0.746 5.746 16 Si 1.000 3.000 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.257 1.257 20 N -0.588 5.588 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.170 0.830 25 H 0.206 0.794 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 10.034 0.030 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.087 4.087 3 C -0.175 4.175 4 C -0.329 4.329 5 S 0.397 5.603 6 C -0.305 4.305 7 C 0.084 3.916 8 C -0.392 4.392 9 C -0.026 4.026 10 N -0.264 5.264 11 C 0.125 3.875 12 C -0.469 4.469 13 H 0.110 0.890 14 C -0.200 4.200 15 N -0.368 5.368 16 Si 0.818 3.182 17 H -0.182 1.182 18 H -0.187 1.187 19 H -0.181 1.181 20 N -0.309 5.309 21 H 0.077 0.923 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.188 0.812 25 H 0.223 0.777 26 H 0.149 0.851 27 H 0.176 0.824 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.812 8.764 0.038 10.516 hybrid contribution -0.827 0.364 -0.046 0.905 sum 4.985 9.128 -0.007 10.400 Atomic orbital electron populations 1.20716 0.89564 1.03516 1.02049 1.19557 0.98407 0.91632 0.99102 1.20196 0.93157 0.99295 1.04881 1.26266 1.00117 0.98798 1.07695 1.83776 1.02515 1.01394 1.72641 1.22715 0.97802 0.94577 1.15378 1.19403 0.90074 0.91119 0.90957 1.22196 1.00104 0.94313 1.22590 1.23309 0.92603 0.96539 0.90195 1.69327 1.03831 1.33160 1.20067 1.20428 0.95523 0.82534 0.88973 1.19657 0.89025 0.94508 1.43694 0.89005 1.27067 1.06108 0.94431 0.92356 1.70205 1.39019 0.99755 1.27871 0.85009 0.74359 0.78551 0.80243 1.18174 1.18695 1.18134 1.68844 1.12420 1.25136 1.24530 0.92310 0.90386 0.90593 0.81246 0.77696 0.85132 0.82383 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.62 9.44 71.24 0.67 -2.95 15 2 C -0.07 -2.56 5.83 -20.73 -0.12 -2.68 15 3 C -0.15 -3.81 9.95 21.14 0.21 -3.60 15 4 C -0.19 -4.39 11.23 66.81 0.75 -3.64 15 5 S 0.13 3.88 22.34 -56.49 -1.26 2.61 15 6 C -0.19 -7.50 6.38 23.97 0.15 -7.35 15 7 C 0.24 11.52 6.77 41.98 0.28 11.80 15 8 C -0.36 -16.92 9.74 22.94 0.22 -16.70 15 9 C 0.15 7.20 11.29 84.76 0.96 8.15 15 10 N -0.55 -31.43 7.85 -194.20 -1.53 -32.96 15 11 C 0.36 21.32 7.37 135.18 1.00 22.32 15 12 C -0.43 -24.41 9.37 23.53 0.22 -24.19 15 13 H 0.09 4.94 7.85 -2.91 -0.02 4.92 15 14 C 0.02 1.22 5.50 85.30 0.47 1.69 15 15 N -0.75 -40.09 11.42 21.84 0.25 -39.84 15 16 Si 1.00 37.98 29.56 68.60 2.03 40.00 15 17 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 18 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 19 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 20 N -0.59 -32.02 7.10 -183.27 -1.30 -33.32 15 21 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.08 2.26 8.13 -2.39 -0.02 2.24 15 23 H 0.08 3.38 5.62 -2.38 -0.01 3.37 15 24 H 0.17 3.28 8.06 -2.91 -0.02 3.26 15 25 H 0.21 2.84 8.06 -2.91 -0.02 2.82 15 26 H 0.13 5.17 7.39 -2.91 -0.02 5.15 15 27 H 0.16 6.63 8.06 -2.91 -0.02 6.61 15 28 H 0.28 13.64 8.29 -92.71 -0.77 12.87 15 Total: -1.00 -67.60 262.05 4.19 -63.41 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.18 Total: 17.24 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.82 Total: -17.14 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -2.58 Total: -106.13 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.26 Total: 2.61 kcal Total: -67.60 4.19 -63.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259050664.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.493 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds