Wall clock time and date at job start Mon Mar 30 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48505 * 109.46955 * 239.99543 * 3 2 1 5 5 H 1.48496 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99771 * 3 2 1 7 7 C 1.37875 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.28748 * 124.73724 * 89.97645 * 10 9 7 12 12 C 1.32582 * 117.12839 * 179.73690 * 11 10 9 13 13 C 1.48202 * 122.98051 * 180.28091 * 12 11 10 14 14 C 1.39440 * 119.73386 * 0.21017 * 13 12 11 15 15 C 1.38321 * 119.05972 * 180.02562 * 14 13 12 16 16 C 1.38854 * 118.52625 * 359.97438 * 15 14 13 17 17 C 1.38182 * 119.38786 * 0.02562 * 16 15 14 18 18 N 1.31812 * 120.89628 * 359.72040 * 17 16 15 19 19 C 1.34928 * 114.04028 * 0.47816 * 12 11 10 20 20 S 1.70908 * 124.74330 * 269.97503 * 10 9 7 21 21 H 0.96992 * 120.00311 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47392 * 59.99370 * 9 7 2 23 23 H 1.09002 * 109.47228 * 299.99545 * 9 7 2 24 24 H 1.07999 * 120.47268 * 0.02562 * 14 13 12 25 25 H 1.07998 * 120.73744 * 180.02562 * 15 14 13 26 26 H 1.07997 * 120.30420 * 180.02562 * 16 15 14 27 27 H 1.07994 * 119.55240 * 179.97438 * 17 16 15 28 28 H 1.08002 * 126.07177 * 179.83521 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 7 2.7075 -4.2018 1.0585 12 6 3.5574 -5.2042 0.8830 13 6 4.1791 -5.9412 2.0084 14 6 3.8704 -5.5874 3.3214 15 6 4.4591 -6.2843 4.3612 16 6 5.3386 -7.3143 4.0550 17 6 5.5996 -7.6121 2.7312 18 7 5.0215 -6.9358 1.7586 19 6 3.8091 -5.4912 -0.4111 20 16 2.8630 -4.3852 -1.4038 21 1 -0.4850 0.8399 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 3.1813 -4.7808 3.5237 25 1 4.2391 -6.0333 5.3883 26 1 5.8141 -7.8775 4.8443 27 1 6.2835 -8.4124 2.4901 28 1 4.4697 -6.2646 -0.7741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259162445.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:50 Heat of formation + Delta-G solvation = 70.094868 kcal Electronic energy + Delta-G solvation = -14242.627926 eV Core-core repulsion = 11771.074281 eV Total energy + Delta-G solvation = -2471.553645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.21552 -38.66447 -33.62717 -32.56525 -31.81014 -30.07042 -27.81696 -25.04107 -23.72936 -23.18071 -21.33593 -19.10740 -17.74685 -16.49627 -16.41157 -15.90980 -15.27774 -14.70971 -14.37232 -14.14073 -13.43195 -13.33910 -13.05021 -12.55009 -12.08973 -11.81916 -11.35100 -11.02074 -10.89203 -10.69935 -10.12242 -9.92493 -9.71176 -9.46440 -9.27142 -8.90235 -8.74945 -8.50978 -7.83135 -6.15101 -4.19861 0.75536 1.32435 1.66384 1.98497 2.41023 3.28797 3.29236 3.32948 3.38174 4.02781 4.13773 4.37778 4.82445 4.85546 5.04754 5.15283 5.21653 5.36370 5.64310 5.80699 5.93302 5.99679 6.21217 6.25673 6.66491 6.76249 7.24120 7.35062 7.78661 7.97948 8.09523 8.44641 8.81558 9.44140 10.95012 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029406 B = 0.005624 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.956029 B = 4977.203015 C = 5515.893791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.085 3.915 10 C 0.125 3.875 11 N -0.485 5.485 12 C 0.096 3.904 13 C 0.207 3.793 14 C -0.137 4.137 15 C -0.079 4.079 16 C -0.181 4.181 17 C 0.098 3.902 18 N -0.480 5.480 19 C -0.245 4.245 20 S 0.101 5.899 21 H 0.266 0.734 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.148 0.852 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.156 0.844 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.000 -12.665 4.119 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.045 3.955 10 C -0.154 4.154 11 N -0.198 5.198 12 C -0.036 4.036 13 C 0.068 3.932 14 C -0.158 4.158 15 C -0.105 4.105 16 C -0.201 4.201 17 C -0.060 4.060 18 N -0.189 5.189 19 C -0.386 4.386 20 S 0.358 5.642 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.166 0.834 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.173 0.827 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.702 -12.408 2.655 14.844 hybrid contribution 0.772 0.622 1.642 1.918 sum 8.474 -11.786 4.297 15.139 Atomic orbital electron populations 1.69923 1.06013 1.27361 1.49602 1.24948 0.94937 0.99298 0.94716 0.86505 0.79506 0.82313 0.78879 1.20000 1.21056 1.20038 1.20865 0.93076 0.89187 1.52385 0.92301 1.18172 0.90951 0.86549 0.99857 1.28064 0.99641 0.99270 0.88429 1.66144 1.12425 1.09239 1.32035 1.18300 0.98577 0.95857 0.90818 1.18889 0.92425 0.91322 0.90536 1.22256 1.00399 1.00797 0.92312 1.21579 0.94834 0.94280 0.99771 1.22136 1.00383 0.99419 0.98171 1.22612 0.97189 0.97732 0.88512 1.67513 1.07954 1.06172 1.37307 1.26948 1.08819 1.06934 0.95945 1.83961 1.38660 1.26687 1.14880 0.92466 0.93691 0.92679 0.83424 0.84695 0.84971 0.82723 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.52 -14.18 9.09 -34.44 -0.31 -14.49 15 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 9 C 0.09 2.15 5.55 -29.04 -0.16 1.99 15 10 C 0.13 2.81 6.55 -13.57 -0.09 2.72 15 11 N -0.48 -10.68 9.90 -8.45 -0.08 -10.77 15 12 C 0.10 1.88 6.64 -84.62 -0.56 1.32 15 13 C 0.21 3.60 6.74 -82.95 -0.56 3.04 15 14 C -0.14 -2.13 9.67 -39.10 -0.38 -2.50 15 15 C -0.08 -0.94 10.16 -39.32 -0.40 -1.34 15 16 C -0.18 -1.90 10.11 -39.37 -0.40 -2.30 15 17 C 0.10 1.16 11.17 -17.58 -0.20 0.97 15 18 N -0.48 -7.49 9.85 -9.79 -0.10 -7.59 15 19 C -0.25 -4.38 10.86 29.56 0.32 -4.06 15 20 S 0.10 1.87 23.16 -107.50 -2.49 -0.62 15 21 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.05 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.06 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.15 2.41 7.69 -52.49 -0.40 2.00 15 25 H 0.14 1.21 8.06 -52.49 -0.42 0.79 15 26 H 0.13 0.94 8.06 -52.49 -0.42 0.52 15 27 H 0.16 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.17 2.71 7.99 -52.49 -0.42 2.29 15 LS Contribution 271.25 15.07 4.09 4.09 Total: -1.00 -30.10 271.25 -8.18 -38.28 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -2.48 Total: -1.85 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.83 Total: -13.00 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.56 Total: -43.09 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.49 Total: -0.62 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.10 -8.18 -38.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259162445.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.373 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds