Wall clock time and date at job start Mon Mar 30 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48505 * 109.46955 * 239.99543 * 3 2 1 5 5 H 1.48496 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99771 * 3 2 1 7 7 C 1.37875 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.28748 * 124.73724 * 89.97645 * 10 9 7 12 12 C 1.32582 * 117.12839 * 179.73690 * 11 10 9 13 13 C 1.48202 * 122.98051 * 180.28091 * 12 11 10 14 14 C 1.39440 * 119.73386 * 0.21017 * 13 12 11 15 15 C 1.38321 * 119.05972 * 180.02562 * 14 13 12 16 16 C 1.38854 * 118.52625 * 359.97438 * 15 14 13 17 17 C 1.38182 * 119.38786 * 0.02562 * 16 15 14 18 18 N 1.31812 * 120.89628 * 359.72040 * 17 16 15 19 19 C 1.34928 * 114.04028 * 0.47816 * 12 11 10 20 20 S 1.70908 * 124.74330 * 269.97503 * 10 9 7 21 21 H 0.96992 * 120.00311 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47392 * 59.99370 * 9 7 2 23 23 H 1.09002 * 109.47228 * 299.99545 * 9 7 2 24 24 H 1.07999 * 120.47268 * 0.02562 * 14 13 12 25 25 H 1.07998 * 120.73744 * 180.02562 * 15 14 13 26 26 H 1.07997 * 120.30420 * 180.02562 * 16 15 14 27 27 H 1.07994 * 119.55240 * 179.97438 * 17 16 15 28 28 H 1.08002 * 126.07177 * 179.83521 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 7 2.7075 -4.2018 1.0585 12 6 3.5574 -5.2042 0.8830 13 6 4.1791 -5.9412 2.0084 14 6 3.8704 -5.5874 3.3214 15 6 4.4591 -6.2843 4.3612 16 6 5.3386 -7.3143 4.0550 17 6 5.5996 -7.6121 2.7312 18 7 5.0215 -6.9358 1.7586 19 6 3.8091 -5.4912 -0.4111 20 16 2.8630 -4.3852 -1.4038 21 1 -0.4850 0.8399 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 3.1813 -4.7808 3.5237 25 1 4.2391 -6.0333 5.3883 26 1 5.8141 -7.8775 4.8443 27 1 6.2835 -8.4124 2.4901 28 1 4.4697 -6.2646 -0.7741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259162445.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:50 Heat of formation + Delta-G solvation = 51.422565 kcal Electronic energy + Delta-G solvation = -14243.437618 eV Core-core repulsion = 11771.074281 eV Total energy + Delta-G solvation = -2472.363337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40428 -40.06875 -35.59174 -33.76328 -33.13928 -31.57821 -29.48629 -26.63829 -25.31372 -24.22953 -22.83844 -20.64067 -19.12402 -18.60526 -17.56678 -17.07104 -16.57135 -16.34765 -15.81119 -15.53699 -14.76282 -14.73722 -14.36809 -14.02445 -13.95399 -13.31062 -12.88227 -12.74687 -12.59973 -12.38283 -12.06553 -11.72006 -10.89648 -10.69871 -10.59902 -10.54805 -10.39115 -10.32180 -9.21858 -8.26003 -6.39412 -0.49240 0.25125 0.35608 0.46677 0.84524 1.40485 1.42922 1.51219 1.90181 2.39161 2.78371 2.99129 3.07281 3.78618 3.83207 4.03353 4.17604 4.21513 4.46126 4.50815 4.63522 4.87386 4.97117 5.19530 5.20165 5.28005 5.33745 5.63864 5.75906 6.00921 6.66921 6.81289 6.99138 7.28716 8.83961 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029406 B = 0.005624 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.956029 B = 4977.203015 C = 5515.893791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.096 3.904 10 C 0.079 3.921 11 N -0.502 5.502 12 C 0.076 3.924 13 C 0.171 3.829 14 C -0.159 4.159 15 C -0.075 4.075 16 C -0.159 4.159 17 C 0.093 3.907 18 N -0.497 5.497 19 C -0.233 4.233 20 S 0.154 5.846 21 H 0.270 0.730 22 H 0.034 0.966 23 H 0.024 0.976 24 H 0.125 0.875 25 H 0.166 0.834 26 H 0.179 0.821 27 H 0.194 0.806 28 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -14.122 4.848 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.056 3.944 10 C -0.199 4.199 11 N -0.217 5.217 12 C -0.055 4.055 13 C 0.034 3.966 14 C -0.181 4.181 15 C -0.101 4.101 16 C -0.179 4.179 17 C -0.065 4.065 18 N -0.208 5.208 19 C -0.374 4.374 20 S 0.410 5.590 21 H 0.079 0.921 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.143 0.857 25 H 0.183 0.817 26 H 0.196 0.804 27 H 0.211 0.789 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 10.117 -13.865 3.380 17.493 hybrid contribution 0.112 0.883 1.500 1.744 sum 10.229 -12.982 4.880 17.233 Atomic orbital electron populations 1.70030 1.07453 1.28447 1.50179 1.25813 0.95799 1.02814 0.94065 0.85482 0.78371 0.78012 0.79119 1.18917 1.20073 1.19819 1.21124 0.92919 0.90619 1.52608 0.92988 1.17777 0.91167 0.87639 0.97841 1.27487 1.01263 1.00296 0.90887 1.66084 1.12801 1.09935 1.32839 1.18708 0.98515 0.95644 0.92603 1.18793 0.94510 0.92993 0.90300 1.22222 1.01326 1.01432 0.93073 1.21962 0.94124 0.93828 1.00193 1.22646 0.98386 0.97991 0.98848 1.23381 0.96737 0.97696 0.88720 1.67473 1.08132 1.06122 1.39031 1.27291 1.08147 1.06684 0.95301 1.83568 1.37589 1.25589 1.12209 0.92135 0.94747 0.95823 0.85702 0.81695 0.80377 0.78924 0.78167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 13.29 21.45 0.28 -53.88 15 2 C 0.01 0.83 5.46 84.65 0.46 1.30 15 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 15 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 15 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 7 C -0.53 -30.42 9.09 25.60 0.23 -30.19 15 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.10 5.15 5.55 29.10 0.16 5.32 15 10 C 0.08 3.71 6.55 88.56 0.58 4.29 15 11 N -0.50 -23.14 9.90 -180.64 -1.79 -24.93 15 12 C 0.08 3.05 6.64 40.92 0.27 3.32 15 13 C 0.17 5.94 6.74 41.95 0.28 6.22 15 14 C -0.16 -4.98 9.67 22.58 0.22 -4.76 15 15 C -0.08 -1.61 10.16 22.44 0.23 -1.38 15 16 C -0.16 -2.64 10.11 22.40 0.23 -2.41 15 17 C 0.09 1.87 11.17 84.68 0.95 2.82 15 18 N -0.50 -14.61 9.85 -184.89 -1.82 -16.43 15 19 C -0.23 -8.20 10.86 67.06 0.73 -7.47 15 20 S 0.15 5.72 23.16 -56.49 -1.31 4.41 15 21 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 22 H 0.03 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.02 1.37 8.14 -2.39 -0.02 1.36 15 24 H 0.12 4.35 7.69 -2.91 -0.02 4.32 15 25 H 0.17 2.42 8.06 -2.91 -0.02 2.40 15 26 H 0.18 1.36 8.06 -2.91 -0.02 1.34 15 27 H 0.19 2.28 8.06 -2.91 -0.02 2.26 15 28 H 0.20 5.85 7.99 -2.91 -0.02 5.82 15 Total: -1.00 -68.08 271.25 2.91 -65.17 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.17 Total: 2.71 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.34 Total: -22.95 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -3.32 Total: -95.24 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.31 Total: 4.41 kcal Total: -68.08 2.91 -65.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259162445.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.597 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds