Wall clock time and date at job start Mon Mar 30 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38701 * 120.30835 * 2 1 4 4 C 1.40512 * 118.54188 * 180.24238 * 3 2 1 5 5 C 1.47528 * 120.50896 * 179.77741 * 4 3 2 6 6 C 1.34987 * 125.27783 * 179.71593 * 5 4 3 7 7 C 1.37726 * 114.71818 * 180.21298 * 6 5 4 8 8 C 1.33799 * 115.08114 * 359.53605 * 7 6 5 9 9 S 1.75868 * 109.74986 * 0.44022 * 8 7 6 10 10 N 1.33029 * 118.98171 * 359.50117 * 4 3 2 11 11 C 1.33309 * 120.51220 * 0.25191 * 10 4 3 12 12 C 1.41589 * 119.21217 * 179.97438 * 11 10 4 13 13 H 1.08010 * 119.99816 * 353.63124 * 12 11 10 14 14 C 1.40030 * 120.00561 * 173.63740 * 12 11 10 15 15 N 1.30712 * 119.99763 * 6.30684 * 14 12 11 16 16 Si 1.86797 * 120.00566 * 186.31308 * 14 12 11 17 17 H 1.48501 * 109.47507 * 94.97920 * 16 14 12 18 18 H 1.48503 * 109.47259 * 214.98408 * 16 14 12 19 19 H 1.48504 * 109.46737 * 334.98157 * 16 14 12 20 20 N 1.32034 * 120.29996 * 179.74046 * 2 1 3 21 21 H 1.08996 * 109.47085 * 270.26351 * 1 2 3 22 22 H 1.09001 * 109.46432 * 30.26304 * 1 2 3 23 23 H 1.08999 * 109.47056 * 150.25733 * 1 2 3 24 24 H 1.07999 * 120.72953 * 359.97438 * 3 2 1 25 25 H 1.08001 * 122.64095 * 359.94339 * 6 5 4 26 26 H 1.07995 * 122.45818 * 179.73150 * 7 6 5 27 27 H 1.07999 * 125.12387 * 180.15850 * 8 7 6 28 28 H 0.96994 * 119.99981 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1974 0.0000 4 6 3.6115 1.1541 -0.0052 5 6 4.3992 2.4015 -0.0104 6 6 5.7473 2.4722 -0.0101 7 6 6.2568 3.7517 -0.0109 8 6 5.3409 4.7270 -0.0216 9 16 3.7275 4.0270 -0.0188 10 7 4.2199 -0.0289 0.0002 11 6 3.5081 -1.1560 0.0053 12 6 4.1841 -2.4001 0.0104 13 1 5.2587 -2.4313 -0.0936 14 6 3.4595 -3.5902 0.1502 15 7 2.1527 -3.5633 0.1521 16 14 4.3604 -5.2162 0.3342 17 1 4.4978 -5.5457 1.7757 18 1 3.5912 -6.2882 -0.3475 19 1 5.7083 -5.1074 -0.2794 20 7 2.1732 -1.1400 0.0052 21 1 -0.3633 0.0047 1.0276 22 1 -0.3632 0.8877 -0.5179 23 1 -0.3633 -0.8923 -0.5098 24 1 1.6841 2.1424 -0.0004 25 1 6.3766 1.5945 -0.0051 26 1 7.3178 3.9530 -0.0065 27 1 5.5594 5.7846 -0.0262 28 1 1.6508 -4.3875 0.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259198772.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:24 Heat of formation + Delta-G solvation = 70.895929 kcal Electronic energy + Delta-G solvation = -14611.089522 eV Core-core repulsion = 12139.570614 eV Total energy + Delta-G solvation = -2471.518908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.05315 -37.21022 -33.92264 -32.96628 -31.26963 -28.35355 -27.41574 -26.30855 -23.98557 -21.80881 -20.93406 -18.60142 -17.92276 -16.47343 -15.83850 -15.20113 -14.76434 -13.95554 -13.76915 -13.63574 -12.74111 -12.72851 -12.38299 -11.95839 -11.92115 -11.81494 -11.36258 -11.27447 -11.25628 -10.71081 -10.50737 -10.30076 -9.71528 -9.11945 -9.08407 -8.33390 -8.16346 -7.60602 -7.42703 -6.57506 -4.75540 1.05106 1.92049 2.34008 2.55933 2.72041 3.04540 3.08530 3.09903 3.48687 3.87220 4.62267 5.13343 5.30326 5.62065 5.69732 5.79316 5.94539 5.97102 6.30777 6.37017 6.37438 6.50731 6.55242 6.72312 6.83553 6.90254 7.04270 7.22830 7.59049 8.15197 8.46539 8.54993 9.02980 10.09212 10.24137 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.006586 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.074208 B = 4250.384125 C = 5147.211311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.181 3.819 3 C -0.356 4.356 4 C 0.241 3.759 5 C -0.110 4.110 6 C -0.118 4.118 7 C -0.131 4.131 8 C -0.234 4.234 9 S 0.114 5.886 10 N -0.577 5.577 11 C 0.397 3.603 12 C -0.399 4.399 13 H 0.093 0.907 14 C 0.067 3.933 15 N -0.710 5.710 16 Si 0.919 3.081 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.259 1.259 20 N -0.503 5.503 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.149 0.851 26 H 0.137 0.863 27 H 0.160 0.840 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 8.665 0.050 8.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.027 3.973 3 C -0.385 4.385 4 C 0.089 3.911 5 C -0.228 4.228 6 C -0.149 4.149 7 C -0.162 4.162 8 C -0.370 4.370 9 S 0.378 5.622 10 N -0.298 5.298 11 C 0.159 3.841 12 C -0.435 4.435 13 H 0.112 0.888 14 C -0.160 4.160 15 N -0.332 5.332 16 Si 0.742 3.258 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.183 1.183 20 N -0.222 5.222 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.123 0.877 25 H 0.166 0.834 26 H 0.154 0.846 27 H 0.178 0.822 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.127 8.146 0.054 8.148 hybrid contribution 1.309 -0.327 0.134 1.356 sum 1.436 7.820 0.188 7.953 Atomic orbital electron populations 1.20525 0.90779 1.01864 1.01666 1.21369 0.96181 0.89193 0.90551 1.21730 0.94192 0.98586 1.23974 1.18780 0.89417 0.89859 0.93057 1.22865 0.96075 0.95089 1.08767 1.20450 0.94032 0.98201 1.02227 1.20091 1.00486 0.91963 1.03692 1.25720 0.95978 1.02928 1.12356 1.83976 1.07862 0.97755 1.72645 1.68734 1.40483 0.97311 1.23273 1.19902 0.85248 0.90581 0.88325 1.19341 0.95202 0.87539 1.41375 0.88849 1.26090 0.94952 1.01317 0.93666 1.70151 1.06621 1.28812 1.27596 0.86124 0.80422 0.79902 0.79313 1.19331 1.19976 1.18259 1.69226 1.09050 1.25486 1.18430 0.91660 0.92319 0.90971 0.87745 0.83366 0.84564 0.82230 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 10.21 36.01 0.37 -1.37 15 2 C 0.18 4.41 6.82 -82.33 -0.56 3.85 15 3 C -0.36 -8.28 9.42 -38.55 -0.36 -8.64 15 4 C 0.24 5.85 6.78 -82.71 -0.56 5.29 15 5 C -0.11 -2.22 6.38 -36.95 -0.24 -2.46 15 6 C -0.12 -2.15 9.86 -40.92 -0.40 -2.55 15 7 C -0.13 -1.92 10.16 -41.33 -0.42 -2.34 15 8 C -0.23 -3.17 11.23 29.17 0.33 -2.84 15 9 S 0.11 1.81 22.34 -107.50 -2.40 -0.59 15 10 N -0.58 -15.62 10.01 -9.28 -0.09 -15.72 15 11 C 0.40 11.36 7.36 -158.40 -1.17 10.19 15 12 C -0.40 -10.97 9.37 -37.63 -0.35 -11.33 15 13 H 0.09 2.46 7.86 -52.48 -0.41 2.05 15 14 C 0.07 1.68 5.49 -17.36 -0.10 1.59 15 15 N -0.71 -18.56 11.45 55.55 0.64 -17.93 15 16 Si 0.92 18.49 29.56 -169.99 -5.03 13.46 15 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 20 N -0.50 -14.02 7.82 -8.96 -0.07 -14.10 15 21 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.06 0.95 8.09 -51.93 -0.42 0.53 15 23 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 24 H 0.10 2.13 7.39 -52.49 -0.39 1.74 15 25 H 0.15 2.80 8.00 -52.49 -0.42 2.38 15 26 H 0.14 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.16 1.63 8.06 -52.49 -0.42 1.20 15 28 H 0.28 6.44 8.29 -40.82 -0.34 6.11 15 LS Contribution 267.61 15.07 4.03 4.03 Total: -1.00 -30.33 267.61 -8.85 -39.18 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.47 Total: 2.26 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -3.46 Total: -10.61 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.47 Total: -47.74 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.40 Total: -0.59 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.33 -8.85 -39.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259198772.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.077 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds