Wall clock time and date at job start Mon Mar 30 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38701 * 120.30835 * 2 1 4 4 C 1.40512 * 118.54188 * 180.24238 * 3 2 1 5 5 C 1.47528 * 120.50896 * 179.77741 * 4 3 2 6 6 C 1.34987 * 125.27783 * 179.71593 * 5 4 3 7 7 C 1.37726 * 114.71818 * 180.21298 * 6 5 4 8 8 C 1.33799 * 115.08114 * 359.53605 * 7 6 5 9 9 S 1.75868 * 109.74986 * 0.44022 * 8 7 6 10 10 N 1.33029 * 118.98171 * 359.50117 * 4 3 2 11 11 C 1.33309 * 120.51220 * 0.25191 * 10 4 3 12 12 C 1.41589 * 119.21217 * 179.97438 * 11 10 4 13 13 H 1.08010 * 119.99816 * 353.63124 * 12 11 10 14 14 C 1.40030 * 120.00561 * 173.63740 * 12 11 10 15 15 N 1.30712 * 119.99763 * 6.30684 * 14 12 11 16 16 Si 1.86797 * 120.00566 * 186.31308 * 14 12 11 17 17 H 1.48501 * 109.47507 * 94.97920 * 16 14 12 18 18 H 1.48503 * 109.47259 * 214.98408 * 16 14 12 19 19 H 1.48504 * 109.46737 * 334.98157 * 16 14 12 20 20 N 1.32034 * 120.29996 * 179.74046 * 2 1 3 21 21 H 1.08996 * 109.47085 * 270.26351 * 1 2 3 22 22 H 1.09001 * 109.46432 * 30.26304 * 1 2 3 23 23 H 1.08999 * 109.47056 * 150.25733 * 1 2 3 24 24 H 1.07999 * 120.72953 * 359.97438 * 3 2 1 25 25 H 1.08001 * 122.64095 * 359.94339 * 6 5 4 26 26 H 1.07995 * 122.45818 * 179.73150 * 7 6 5 27 27 H 1.07999 * 125.12387 * 180.15850 * 8 7 6 28 28 H 0.96994 * 119.99981 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1974 0.0000 4 6 3.6115 1.1541 -0.0052 5 6 4.3992 2.4015 -0.0104 6 6 5.7473 2.4722 -0.0101 7 6 6.2568 3.7517 -0.0109 8 6 5.3409 4.7270 -0.0216 9 16 3.7275 4.0270 -0.0188 10 7 4.2199 -0.0289 0.0002 11 6 3.5081 -1.1560 0.0053 12 6 4.1841 -2.4001 0.0104 13 1 5.2587 -2.4313 -0.0936 14 6 3.4595 -3.5902 0.1502 15 7 2.1527 -3.5633 0.1521 16 14 4.3604 -5.2162 0.3342 17 1 4.4978 -5.5457 1.7757 18 1 3.5912 -6.2882 -0.3475 19 1 5.7083 -5.1074 -0.2794 20 7 2.1732 -1.1400 0.0052 21 1 -0.3633 0.0047 1.0276 22 1 -0.3632 0.8877 -0.5179 23 1 -0.3633 -0.8923 -0.5098 24 1 1.6841 2.1424 -0.0004 25 1 6.3766 1.5945 -0.0051 26 1 7.3178 3.9530 -0.0065 27 1 5.5594 5.7846 -0.0262 28 1 1.6508 -4.3875 0.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259198772.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:24 Heat of formation + Delta-G solvation = 52.723200 kcal Electronic energy + Delta-G solvation = -14611.877551 eV Core-core repulsion = 12139.570614 eV Total energy + Delta-G solvation = -2472.306937 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91432 -38.55097 -35.81325 -34.74792 -33.06731 -29.89874 -29.13090 -28.17772 -25.39435 -23.65319 -22.56202 -20.08614 -19.63335 -18.04311 -17.58641 -16.84527 -16.29814 -15.73766 -15.44267 -15.36006 -14.29613 -14.14067 -13.84233 -13.55205 -13.43605 -13.26527 -12.96256 -12.90131 -12.85513 -12.59015 -11.96574 -11.78758 -11.45917 -10.96571 -10.92243 -10.13071 -9.41073 -9.36961 -9.19853 -8.46292 -6.78290 -0.35994 0.62280 0.70573 1.08836 1.12743 1.38576 1.49054 1.54833 1.98710 2.19112 2.73702 3.57256 3.82850 3.90644 4.16493 4.24389 4.51337 4.61337 4.72885 4.76732 4.85724 4.85998 5.09860 5.15229 5.20170 5.34540 5.46317 5.56812 5.77990 6.13466 6.51101 6.60419 7.12313 8.18513 8.35180 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.006586 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.074208 B = 4250.384125 C = 5147.211311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.159 3.841 3 C -0.360 4.360 4 C 0.231 3.769 5 C -0.174 4.174 6 C -0.109 4.109 7 C -0.145 4.145 8 C -0.196 4.196 9 S 0.145 5.855 10 N -0.611 5.611 11 C 0.367 3.633 12 C -0.438 4.438 13 H 0.087 0.913 14 C 0.025 3.975 15 N -0.743 5.743 16 Si 1.001 2.999 17 H -0.261 1.261 18 H -0.260 1.260 19 H -0.257 1.257 20 N -0.539 5.539 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.134 0.866 25 H 0.128 0.872 26 H 0.171 0.829 27 H 0.207 0.793 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 10.636 0.173 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.007 3.993 3 C -0.388 4.388 4 C 0.080 3.920 5 C -0.292 4.292 6 C -0.143 4.143 7 C -0.175 4.175 8 C -0.332 4.332 9 S 0.408 5.592 10 N -0.333 5.333 11 C 0.129 3.871 12 C -0.473 4.473 13 H 0.105 0.895 14 C -0.199 4.199 15 N -0.365 5.365 16 Si 0.819 3.181 17 H -0.186 1.186 18 H -0.184 1.184 19 H -0.180 1.180 20 N -0.259 5.259 21 H 0.099 0.901 22 H 0.110 0.890 23 H 0.083 0.917 24 H 0.151 0.849 25 H 0.146 0.854 26 H 0.189 0.811 27 H 0.224 0.776 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.418 10.165 0.174 10.175 hybrid contribution 1.236 -0.662 0.086 1.405 sum 1.654 9.503 0.260 9.650 Atomic orbital electron populations 1.20580 0.87244 1.03102 1.03027 1.22262 0.98649 0.88957 0.89431 1.22062 0.94149 0.99453 1.23096 1.19469 0.90691 0.90625 0.91204 1.22877 0.97029 0.95905 1.13347 1.20633 0.93451 0.99584 1.00595 1.20282 1.02568 0.90167 1.04443 1.26329 0.94122 1.04845 1.07954 1.83759 1.09123 0.94381 1.71912 1.68771 1.41038 0.98160 1.25297 1.20357 0.86224 0.91601 0.88922 1.19651 0.95278 0.88805 1.43597 0.89457 1.27050 0.95742 1.04559 0.92524 1.70211 1.08155 1.30434 1.27730 0.84931 0.78951 0.74642 0.79531 1.18586 1.18362 1.18045 1.69232 1.08913 1.27253 1.20487 0.90078 0.88971 0.91733 0.84856 0.85431 0.81130 0.77574 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.10 10.21 71.24 0.73 -2.37 15 2 C 0.16 7.95 6.82 42.64 0.29 8.24 15 3 C -0.36 -16.94 9.42 22.94 0.22 -16.72 15 4 C 0.23 11.57 6.78 41.97 0.28 11.86 15 5 C -0.17 -7.03 6.38 23.97 0.15 -6.88 15 6 C -0.11 -3.97 9.86 21.40 0.21 -3.76 15 7 C -0.15 -3.77 10.16 21.14 0.21 -3.56 15 8 C -0.20 -4.40 11.23 66.81 0.75 -3.65 15 9 S 0.14 4.19 22.34 -56.49 -1.26 2.93 15 10 N -0.61 -34.98 10.01 -183.29 -1.84 -36.81 15 11 C 0.37 22.24 7.36 135.18 0.99 23.24 15 12 C -0.44 -25.44 9.37 23.53 0.22 -25.22 15 13 H 0.09 4.92 7.86 -2.91 -0.02 4.90 15 14 C 0.02 1.30 5.49 85.29 0.47 1.76 15 15 N -0.74 -40.13 11.45 21.83 0.25 -39.88 15 16 Si 1.00 38.71 29.56 68.60 2.03 40.74 15 17 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15 18 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 20 N -0.54 -31.42 7.82 -182.27 -1.42 -32.85 15 21 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 22 H 0.09 2.80 8.09 -2.39 -0.02 2.78 15 23 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.13 5.28 7.39 -2.91 -0.02 5.26 15 25 H 0.13 5.04 8.00 -2.91 -0.02 5.02 15 26 H 0.17 3.24 8.06 -2.91 -0.02 3.22 15 27 H 0.21 2.76 8.06 -2.91 -0.02 2.73 15 28 H 0.28 13.63 8.29 -92.71 -0.77 12.86 15 Total: -1.00 -71.01 267.61 3.47 -67.54 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.18 Total: 15.39 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.53 Total: -17.06 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.01 Total: -109.54 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.26 Total: 2.93 kcal Total: -71.01 3.47 -67.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259198772.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.266 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds