Wall clock time and date at job start Mon Mar 30 2020 05:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00585 * 2 1 4 4 H 1.48498 * 109.47031 * 270.00534 * 3 2 1 5 5 H 1.48501 * 109.46877 * 30.00345 * 3 2 1 6 6 H 1.48499 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.37882 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.50691 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.33725 * 122.07810 * 125.00223 * 10 9 7 12 12 S 1.76256 * 108.21809 * 179.77954 * 11 10 9 13 13 C 1.76168 * 89.83760 * 0.30412 * 12 11 10 14 14 C 1.47876 * 125.47264 * 179.97438 * 13 12 11 15 15 C 1.39977 * 120.55194 * 359.69107 * 14 13 12 16 16 C 1.38368 * 118.28566 * 180.02562 * 15 14 13 17 17 C 1.38338 * 119.30989 * 0.02562 * 16 15 14 18 18 N 1.31903 * 121.07354 * 0.02562 * 17 16 15 19 19 C 1.31719 * 121.87549 * 359.65540 * 18 17 16 20 20 N 1.30225 * 109.05975 * 359.69200 * 13 12 11 21 21 H 0.97009 * 119.99629 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46649 * 59.99831 * 9 7 2 23 23 H 1.09003 * 109.47214 * 300.00489 * 9 7 2 24 24 H 1.08003 * 125.88970 * 359.97438 * 11 10 9 25 25 H 1.07999 * 120.85920 * 0.02562 * 15 14 13 26 26 H 1.08009 * 120.34174 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.46560 * 180.02562 * 17 16 15 28 28 H 1.07998 * 119.71865 * 180.31910 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1943 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2300 -3.6447 -0.0005 11 6 2.1974 -4.6068 0.9276 12 16 3.4894 -5.7536 0.5781 13 6 3.9618 -4.7883 -0.8178 14 6 5.0760 -5.0995 -1.7390 15 6 5.8664 -6.2376 -1.5408 16 6 6.8969 -6.4834 -2.4308 17 6 7.1115 -5.6049 -3.4777 18 7 6.3509 -4.5394 -3.6392 19 6 5.3544 -4.2659 -2.8224 20 7 3.1686 -3.7598 -0.9117 21 1 -0.4850 0.8402 0.0004 22 1 0.6239 -2.5566 -0.8903 23 1 0.6245 -2.5571 0.8897 24 1 1.4979 -4.6718 1.7479 25 1 5.6768 -6.9066 -0.7144 26 1 7.5271 -7.3521 -2.3095 27 1 7.9148 -5.7946 -4.1742 28 1 4.7505 -3.3864 -2.9903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259243777.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:43 Heat of formation + Delta-G solvation = 52.083760 kcal Electronic energy + Delta-G solvation = -14287.864869 eV Core-core repulsion = 11815.530204 eV Total energy + Delta-G solvation = -2472.334665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24703 -40.35380 -35.42868 -34.20370 -33.01022 -31.44823 -29.32941 -26.48232 -25.33840 -24.61111 -22.85275 -20.34431 -19.03259 -18.41018 -17.86660 -17.05280 -16.83875 -16.55844 -15.75747 -15.22588 -14.79586 -14.59426 -14.24146 -14.04441 -13.98281 -13.64249 -13.12320 -12.91869 -12.68712 -12.39378 -11.71846 -11.58421 -11.18432 -10.81294 -10.63570 -10.56552 -10.34104 -10.13105 -9.17573 -8.23131 -6.32668 -0.78452 0.22016 0.34142 0.48437 0.68548 1.36925 1.38974 1.49574 1.99174 2.40589 2.85209 2.92931 3.10216 3.52329 3.84979 3.90358 4.04586 4.20148 4.36836 4.50938 4.60796 4.79822 5.05468 5.06454 5.15771 5.32941 5.42728 5.66945 5.70040 6.12897 6.75048 6.89998 6.97500 7.34188 8.87640 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.006292 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.011669 B = 4448.822874 C = 5351.233630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.048 0.952 9 C 0.089 3.911 10 C 0.079 3.921 11 C -0.260 4.260 12 S 0.127 5.873 13 C 0.089 3.911 14 C -0.087 4.087 15 C -0.056 4.056 16 C -0.152 4.152 17 C 0.103 3.897 18 N -0.508 5.508 19 C 0.124 3.876 20 N -0.478 5.478 21 H 0.266 0.734 22 H 0.008 0.992 23 H 0.026 0.974 24 H 0.193 0.807 25 H 0.159 0.841 26 H 0.188 0.812 27 H 0.196 0.804 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -16.500 -1.387 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.066 0.934 9 C 0.050 3.950 10 C -0.052 4.052 11 C -0.398 4.398 12 S 0.383 5.617 13 C -0.186 4.186 14 C -0.093 4.093 15 C -0.083 4.083 16 C -0.171 4.171 17 C -0.055 4.055 18 N -0.217 5.217 19 C -0.035 4.035 20 N -0.192 5.192 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.045 0.955 24 H 0.210 0.790 25 H 0.177 0.823 26 H 0.205 0.795 27 H 0.212 0.788 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.013 -16.395 -1.958 21.656 hybrid contribution -1.102 1.466 0.749 1.981 sum 12.911 -14.929 -1.209 19.774 Atomic orbital electron populations 1.70051 1.07385 1.27955 1.51494 1.25834 0.95802 1.02828 0.94709 0.85471 0.78547 0.78725 0.78446 1.20011 1.19950 1.19448 1.21232 0.92823 0.91228 1.50571 0.93407 1.17731 0.91510 0.89290 0.96486 1.20628 0.95917 0.97679 0.90952 1.27064 1.06455 0.99333 1.06994 1.83820 1.26619 1.26624 1.24632 1.26098 0.99400 0.94293 0.98843 1.18985 0.95277 0.98943 0.96118 1.21939 0.93115 0.93773 0.99510 1.22509 0.97984 1.02207 0.94385 1.23678 0.96830 0.88398 0.96583 1.67774 1.05283 1.20480 1.28181 1.22827 0.93378 0.97892 0.89432 1.66285 1.05310 1.20172 1.27431 0.92484 0.97424 0.95531 0.78991 0.82314 0.79464 0.78765 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.43 15 2 C 0.01 0.38 5.46 84.66 0.46 0.84 15 3 Si 0.96 46.11 29.54 68.60 2.03 48.13 15 4 H -0.27 -12.87 7.11 99.48 0.71 -12.16 15 5 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 7 C -0.52 -31.03 8.97 25.60 0.23 -30.80 15 8 H 0.05 2.89 7.72 -2.91 -0.02 2.87 15 9 C 0.09 4.93 5.45 29.10 0.16 5.09 15 10 C 0.08 3.68 5.99 41.61 0.25 3.93 15 11 C -0.26 -9.61 11.02 66.79 0.74 -8.87 15 12 S 0.13 3.63 22.49 -56.49 -1.27 2.36 15 13 C 0.09 3.17 7.36 87.49 0.64 3.82 15 14 C -0.09 -2.59 5.89 -20.00 -0.12 -2.70 15 15 C -0.06 -1.10 9.73 22.72 0.22 -0.88 15 16 C -0.15 -2.16 10.10 22.32 0.23 -1.94 15 17 C 0.10 1.86 11.17 84.71 0.95 2.81 15 18 N -0.51 -14.20 10.35 -194.78 -2.02 -16.22 15 19 C 0.12 4.03 10.85 85.01 0.92 4.95 15 20 N -0.48 -21.59 9.95 -177.80 -1.77 -23.36 15 21 H 0.27 15.21 8.31 -92.70 -0.77 14.44 15 22 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 23 H 0.03 1.47 8.01 -2.39 -0.02 1.45 15 24 H 0.19 6.13 8.06 -2.91 -0.02 6.11 15 25 H 0.16 2.34 7.42 -2.91 -0.02 2.31 15 26 H 0.19 0.91 8.06 -2.91 -0.02 0.89 15 27 H 0.20 1.93 8.06 -2.91 -0.02 1.90 15 28 H 0.14 5.27 7.83 -2.91 -0.02 5.25 15 Total: -1.00 -72.58 270.51 3.11 -69.48 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: 1.17 Total: -0.21 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.68 Total: -23.76 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -3.50 Total: -96.00 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.27 Total: 2.36 kcal Total: -72.58 3.11 -69.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259243777.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.559 kcal (2) G-P(sol) polarization free energy of solvation -72.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds