Wall clock time and date at job start Mon Mar 30 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00076 * 2 1 4 4 H 1.48505 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47097 * 299.99610 * 3 2 1 6 6 H 1.48497 * 109.47050 * 60.00219 * 3 2 1 7 7 C 1.37882 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47128 * 179.97438 * 9 7 2 11 11 N 1.28757 * 124.73704 * 90.26968 * 10 9 7 12 12 C 1.32568 * 117.12645 * 180.17587 * 11 10 9 13 13 C 1.48229 * 122.97538 * 179.82049 * 12 11 10 14 14 C 1.39852 * 120.91020 * 359.70358 * 13 12 11 15 15 C 1.37909 * 119.01382 * 179.72131 * 14 13 12 16 16 N 1.31965 * 120.88770 * 0.30842 * 15 14 13 17 17 C 1.31973 * 122.01532 * 359.97033 * 16 15 14 18 18 C 1.37905 * 120.88706 * 0.02595 * 17 16 15 19 19 C 1.34916 * 114.04528 * 359.55068 * 12 11 10 20 20 S 1.70915 * 124.74496 * 269.97752 * 10 9 7 21 21 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46786 * 59.99952 * 9 7 2 23 23 H 1.08994 * 109.47150 * 300.00496 * 9 7 2 24 24 H 1.08002 * 120.49547 * 0.02562 * 14 13 12 25 25 H 1.07995 * 119.55486 * 180.27545 * 15 14 13 26 26 H 1.08003 * 119.55308 * 180.02562 * 17 16 15 27 27 H 1.08003 * 120.49314 * 179.97438 * 18 17 16 28 28 H 1.07998 * 126.07065 * 180.19408 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 2.7032 -4.2056 1.0586 12 6 3.5604 -5.2015 0.8831 13 6 4.1863 -5.9351 2.0088 14 6 3.8982 -5.5974 3.3350 15 6 4.4983 -6.3097 4.3521 16 7 5.3378 -7.2928 4.0868 17 6 5.6409 -7.6395 2.8501 18 6 5.0859 -6.9798 1.7737 19 6 3.8082 -5.4918 -0.4110 20 16 2.8628 -4.3854 -1.4039 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8902 24 1 3.2122 -4.7940 3.5594 25 1 4.2787 -6.0593 5.3793 26 1 6.3328 -8.4509 2.6787 27 1 5.3387 -7.2686 0.7642 28 1 4.4693 -6.2649 -0.7739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259251834.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:01 Heat of formation + Delta-G solvation = 68.125437 kcal Electronic energy + Delta-G solvation = -14230.376874 eV Core-core repulsion = 11758.737828 eV Total energy + Delta-G solvation = -2471.639046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24153 -38.81935 -33.87851 -32.72352 -31.25747 -30.33511 -27.92097 -25.15687 -23.80450 -23.12723 -21.39563 -19.21752 -17.82723 -16.54872 -16.51138 -15.66079 -15.45394 -14.78846 -14.29737 -14.17630 -13.64901 -13.53207 -13.27595 -12.57672 -12.18895 -11.70183 -11.38602 -11.09699 -10.92332 -10.78004 -10.23875 -10.06669 -9.55487 -9.49969 -9.13974 -9.00569 -8.87175 -8.56645 -7.98389 -6.20191 -4.25197 0.71463 1.19247 1.65718 1.86823 2.29285 3.22919 3.29678 3.32843 3.38216 4.03675 4.30143 4.36048 4.46652 4.84210 5.09138 5.15653 5.19984 5.25046 5.51381 5.67447 5.78303 5.92195 6.06493 6.40823 6.62114 6.71821 7.17573 7.28982 7.73686 7.97615 8.03316 8.33992 8.76652 9.39289 10.89985 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029176 B = 0.005581 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.465937 B = 5015.634800 C = 5560.828255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.083 3.917 10 C 0.129 3.871 11 N -0.486 5.486 12 C 0.097 3.903 13 C 0.039 3.961 14 C -0.141 4.141 15 C 0.095 3.905 16 N -0.492 5.492 17 C 0.094 3.906 18 C -0.164 4.164 19 C -0.277 4.277 20 S 0.109 5.891 21 H 0.265 0.735 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.147 0.853 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.134 0.866 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -12.037 0.793 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.150 4.150 11 N -0.199 5.199 12 C -0.034 4.034 13 C 0.028 3.972 14 C -0.162 4.162 15 C -0.061 4.061 16 N -0.202 5.202 17 C -0.062 4.062 18 C -0.185 4.185 19 C -0.418 4.418 20 S 0.367 5.633 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.165 0.835 25 H 0.174 0.826 26 H 0.172 0.828 27 H 0.152 0.848 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.441 -12.012 0.880 14.157 hybrid contribution 0.474 0.952 -0.104 1.069 sum 7.916 -11.060 0.776 13.623 Atomic orbital electron populations 1.69944 1.06028 1.27219 1.49581 1.24960 0.94953 0.99371 0.94653 0.86377 0.80067 0.82911 0.77799 1.19604 1.20723 1.20698 1.20923 0.93113 0.89098 1.52391 0.92206 1.18209 0.90990 0.86595 0.99935 1.28156 0.99374 0.99005 0.88493 1.66244 1.12352 1.09397 1.31885 1.18684 0.97880 0.95742 0.91142 1.18521 0.93738 0.93104 0.91858 1.22384 1.00657 1.00979 0.92153 1.22704 0.92462 0.91225 0.99723 1.67635 1.14128 1.15147 1.23266 1.22569 0.97791 0.98381 0.87481 1.22109 0.98425 0.96952 1.01020 1.26840 1.10542 1.08206 0.96227 1.83966 1.38525 1.26159 1.14690 0.92518 0.93667 0.92594 0.83508 0.82577 0.82760 0.84793 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.29 55.43 0.74 -24.45 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.52 -13.98 9.09 -34.44 -0.31 -14.29 15 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 9 C 0.08 2.07 5.55 -29.03 -0.16 1.90 15 10 C 0.13 2.79 6.55 -13.57 -0.09 2.70 15 11 N -0.49 -10.31 10.02 -8.44 -0.08 -10.40 15 12 C 0.10 1.75 6.66 -84.62 -0.56 1.19 15 13 C 0.04 0.60 5.91 -104.58 -0.62 -0.01 15 14 C -0.14 -2.13 9.72 -39.10 -0.38 -2.51 15 15 C 0.09 1.26 11.17 -17.61 -0.20 1.06 15 16 N -0.49 -6.72 10.35 -13.36 -0.14 -6.85 15 17 C 0.09 1.12 11.17 -17.61 -0.20 0.92 15 18 C -0.16 -2.05 9.56 -39.10 -0.37 -2.43 15 19 C -0.28 -4.37 10.66 29.55 0.32 -4.06 15 20 S 0.11 1.90 23.16 -107.50 -2.49 -0.59 15 21 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 22 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.06 1.49 8.14 -51.93 -0.42 1.06 15 24 H 0.15 2.31 7.80 -52.49 -0.41 1.91 15 25 H 0.16 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.16 1.31 8.06 -52.48 -0.42 0.89 15 27 H 0.13 1.32 6.80 -52.48 -0.36 0.97 15 28 H 0.17 2.02 6.98 -52.49 -0.37 1.65 15 LS Contribution 269.22 15.07 4.06 4.06 Total: -1.00 -29.85 269.22 -7.98 -37.83 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -2.36 Total: -1.67 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.67 Total: -13.89 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.51 Total: -41.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.49 Total: -0.59 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.85 -7.98 -37.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259251834.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.956 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds