Wall clock time and date at job start Mon Mar 30 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00076 * 2 1 4 4 H 1.48505 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47097 * 299.99610 * 3 2 1 6 6 H 1.48497 * 109.47050 * 60.00219 * 3 2 1 7 7 C 1.37882 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47128 * 179.97438 * 9 7 2 11 11 N 1.28757 * 124.73704 * 90.26968 * 10 9 7 12 12 C 1.32568 * 117.12645 * 180.17587 * 11 10 9 13 13 C 1.48229 * 122.97538 * 179.82049 * 12 11 10 14 14 C 1.39852 * 120.91020 * 359.70358 * 13 12 11 15 15 C 1.37909 * 119.01382 * 179.72131 * 14 13 12 16 16 N 1.31965 * 120.88770 * 0.30842 * 15 14 13 17 17 C 1.31973 * 122.01532 * 359.97033 * 16 15 14 18 18 C 1.37905 * 120.88706 * 0.02595 * 17 16 15 19 19 C 1.34916 * 114.04528 * 359.55068 * 12 11 10 20 20 S 1.70915 * 124.74496 * 269.97752 * 10 9 7 21 21 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46786 * 59.99952 * 9 7 2 23 23 H 1.08994 * 109.47150 * 300.00496 * 9 7 2 24 24 H 1.08002 * 120.49547 * 0.02562 * 14 13 12 25 25 H 1.07995 * 119.55486 * 180.27545 * 15 14 13 26 26 H 1.08003 * 119.55308 * 180.02562 * 17 16 15 27 27 H 1.08003 * 120.49314 * 179.97438 * 18 17 16 28 28 H 1.07998 * 126.07065 * 180.19408 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 2.7032 -4.2056 1.0586 12 6 3.5604 -5.2015 0.8831 13 6 4.1863 -5.9351 2.0088 14 6 3.8982 -5.5974 3.3350 15 6 4.4983 -6.3097 4.3521 16 7 5.3378 -7.2928 4.0868 17 6 5.6409 -7.6395 2.8501 18 6 5.0859 -6.9798 1.7737 19 6 3.8082 -5.4918 -0.4110 20 16 2.8628 -4.3854 -1.4039 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8902 24 1 3.2122 -4.7940 3.5594 25 1 4.2787 -6.0593 5.3793 26 1 6.3328 -8.4509 2.6787 27 1 5.3387 -7.2686 0.7642 28 1 4.4693 -6.2649 -0.7739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259251834.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:00 Heat of formation + Delta-G solvation = 49.662444 kcal Electronic energy + Delta-G solvation = -14231.177489 eV Core-core repulsion = 11758.737828 eV Total energy + Delta-G solvation = -2472.439661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39969 -40.13546 -35.68973 -34.19220 -32.26791 -31.95178 -29.50375 -26.69277 -25.37711 -24.17843 -22.86534 -20.63666 -19.15642 -18.63067 -17.67000 -16.82931 -16.60680 -16.44960 -15.73462 -15.57442 -14.75964 -14.74751 -14.50995 -14.32037 -14.00533 -13.35042 -12.78795 -12.73735 -12.57003 -12.37471 -12.09717 -11.76488 -11.13528 -10.70043 -10.51897 -10.49339 -10.33844 -10.12134 -9.34829 -8.28277 -6.41607 -0.50790 0.20356 0.31333 0.46693 0.83916 1.38573 1.39878 1.52438 1.98200 2.37658 2.96350 3.00978 3.08791 3.58397 3.77126 4.01368 4.10685 4.15684 4.35082 4.45616 4.68083 4.81529 4.91043 5.08233 5.20263 5.26865 5.39348 5.62106 5.72598 5.98779 6.65588 6.87726 6.98962 7.26943 8.82075 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029176 B = 0.005581 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.465937 B = 5015.634800 C = 5560.828255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.094 3.906 10 C 0.076 3.924 11 N -0.508 5.508 12 C 0.070 3.930 13 C 0.015 3.985 14 C -0.163 4.163 15 C 0.096 3.904 16 N -0.506 5.506 17 C 0.099 3.901 18 C -0.154 4.154 19 C -0.249 4.249 20 S 0.158 5.842 21 H 0.269 0.731 22 H 0.033 0.967 23 H 0.021 0.979 24 H 0.125 0.875 25 H 0.177 0.823 26 H 0.195 0.805 27 H 0.168 0.832 28 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.044 -13.615 -0.042 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.053 3.947 10 C -0.202 4.202 11 N -0.222 5.222 12 C -0.060 4.060 13 C 0.004 3.996 14 C -0.184 4.184 15 C -0.059 4.059 16 N -0.216 5.216 17 C -0.057 4.057 18 C -0.174 4.174 19 C -0.389 4.389 20 S 0.415 5.585 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.143 0.857 25 H 0.194 0.806 26 H 0.212 0.788 27 H 0.185 0.815 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 9.931 -13.594 0.054 16.835 hybrid contribution -0.239 1.289 0.150 1.319 sum 9.692 -12.305 0.205 15.665 Atomic orbital electron populations 1.70048 1.07475 1.28319 1.50308 1.25828 0.95799 1.02882 0.94099 0.85362 0.78722 0.78579 0.78200 1.19274 1.19489 1.20247 1.21176 0.92897 0.90596 1.52381 0.92967 1.17778 0.91294 0.87894 0.97700 1.27459 1.01324 1.00246 0.91178 1.66151 1.12886 1.10293 1.32907 1.19037 0.98216 0.95731 0.93038 1.18692 0.95239 0.94509 0.91166 1.22337 1.01513 1.01459 0.93119 1.22957 0.91934 0.90775 1.00259 1.67731 1.14224 1.15138 1.24494 1.23253 0.97336 0.98544 0.86589 1.22427 0.96762 0.95271 1.02975 1.27400 1.09035 1.07515 0.94915 1.83628 1.37581 1.25276 1.12033 0.92154 0.94848 0.96107 0.85653 0.80569 0.78829 0.81452 0.76516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 13.29 21.45 0.28 -53.50 15 2 C 0.01 0.76 5.46 84.66 0.46 1.22 15 3 Si 0.97 43.50 29.54 68.60 2.03 45.53 15 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 7 C -0.53 -29.85 9.09 25.60 0.23 -29.62 15 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 15 9 C 0.09 4.93 5.55 29.10 0.16 5.09 15 10 C 0.08 3.40 6.55 88.56 0.58 3.98 15 11 N -0.51 -22.19 10.02 -180.62 -1.81 -24.00 15 12 C 0.07 2.46 6.66 40.93 0.27 2.74 15 13 C 0.01 0.44 5.91 -19.84 -0.12 0.32 15 14 C -0.16 -4.98 9.72 22.58 0.22 -4.76 15 15 C 0.10 2.46 11.17 84.59 0.94 3.41 15 16 N -0.51 -12.57 10.35 -196.18 -2.03 -14.60 15 17 C 0.10 1.97 11.17 84.59 0.94 2.92 15 18 C -0.15 -3.28 9.56 22.58 0.22 -3.06 15 19 C -0.25 -7.05 10.66 67.06 0.72 -6.34 15 20 S 0.16 5.30 23.16 -56.49 -1.31 4.00 15 21 H 0.27 14.64 8.31 -92.71 -0.77 13.87 15 22 H 0.03 1.77 8.14 -2.39 -0.02 1.76 15 23 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.13 4.26 7.80 -2.91 -0.02 4.23 15 25 H 0.18 3.54 8.06 -2.91 -0.02 3.52 15 26 H 0.19 2.24 8.06 -2.91 -0.02 2.22 15 27 H 0.17 2.33 6.80 -2.91 -0.02 2.31 15 28 H 0.22 3.89 6.98 -2.91 -0.02 3.87 15 Total: -1.00 -67.25 269.22 2.97 -64.27 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.18 Total: 2.41 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 4.63 Total: -24.11 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -3.55 Total: -92.10 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.31 Total: 4.00 kcal Total: -67.25 2.97 -64.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259251834.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.935 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds